NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002947

3300002947: Subsurface hydrocarbon microbial communities from various worldwide Shell locations



Overview

Basic Information
IMG/M Taxon OID3300002947 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		 | |
Sample NameSubsurface hydrocarbon microbial communities from various worldwide Shell locations
Sequencing StatusComplete
Sequencing CenterShell Corporation
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size2592275199
Sequencing Scaffolds0
Novel Protein Genes15
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameOil Reservoir
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Oil Reservoir

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationRed Deer, Alberta, Canada
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020881Metagenome / Metatranscriptome221N
F022008Metagenome / Metatranscriptome216Y
F031881Metagenome / Metatranscriptome181Y
F033394Metagenome / Metatranscriptome177N
F033769Metagenome / Metatranscriptome176N
F066897Metagenome / Metatranscriptome126Y
F082560Metagenome113N
F087074Metagenome / Metatranscriptome110Y
F103496Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link

Sequences

Scaffold IDProtein IDFamilySequence
DTI14_10045DTI14_100451F033394MKSIYIYFNNEIADIYYKDNSKNLHCTINLYTDSKNFREQFRKNLLRRYWDRLEINDIDDLKMIVKDSFVQIFTLQRENFDKND*
DTI14_10063DTI14_100632F033769MSVNSGVKTATYTPSTVGVAGGRKYLRLTNESLDMRCRAGDANISSEAGIIIEPGQTVEFRPLPSANTDIYVMSEAKAVKLAYYEVIV*
DTI14_10210DTI14_102102F031881MNSYQFTINKKLSTVRVGENKFKFTIDKSGATTINITQDKIEDVIYSVFDNSEYLDLVRIITNIKGTQQVPKIFLQGTGGVGNGLVDSQGCGFVDTTDLVLTDVPISVTKKRMGLELCLDDLVNTTLEVHISSGARNESLDIEDALLAYFAQILRKNIQNYVFADSVDGILNKILTDGTAVTTTASSDLGKLYDLFEALPADWKNSTEASPIIFISPNLMTGVRSEIITSSAPITSSIEVVNNRFNLPLTNAVVVATPHLTATKAVGGIQNYLFLGTDLESDFEDTRIWYSNDNETIRFSSMLYLGTAVADITDFVKYTV*
DTI14_10270DTI14_102702F033769MSAINCGVKTATNTPSTVGVATGRKYLRLTNESLDMRCRAGASNISSEAGIIIEPGQTVEFRPLPSDNTDIYVMSEGKPVKLAYYEVIA*
DTI14_10292DTI14_102922F087074GYNEVETYISQILRNLLNSDFDGYTLNLIVKEYDDAGYVNNFDMLFTAIPSIYNSYLPPIKNYFFYYYQSTLDYDILSTRGITLYDDDFNELLDEISITTTLNNIYKETLDPPFTKIMTITHKQVCEPLYKIRYLNLHTGFYDTFGGWYLKQDTINVEKQIYNRQTLMDTGTRQALPEFTDEITLISYDLPIDQANYIAKSIIMSPKTFLIDPNNNEVECVVMNKNYTNALSIVNVFANINLNVKL*
DTI14_10354DTI14_103542F022008MTMNDVEMLREALNDLSKQLQTLSEDNRASFGRIYERLTKIETQMSEREHQFNRYEKTIENHEMRIRTVEGELGALRDVPEKLWKVSMSNSKLTGMVAAAGGVGGLVATIITVVLKSLGE
DTI14_10354DTI14_103543F103496MPFNDKIRKLPLTKLIALCFTIFTCVLIVLDVTSLCPLTERSADLLKWLGSTIIVGYFGKSSYEHKIDT
DTI14_10373DTI14_103733F066897LIIIAVILLSAVFIWHNHTSTQDMLLKAQETIKETQEALKESQEALLKLDKIAQEIKDTSQIAEKAGDEYVKEVLLISDDEFLDKLNSYSSIVVERVELE*
DTI14_10410DTI14_104103F066897EGGELMSSKWFWLILIAVILFSAIFLWYNHTSTQKALIKAQETIEETKQALRENQDALQKIDEITQKLQDVTRIAKEAGDERVKEIKYVSDDDFLNIANQYSALMVERVE*
DTI14_10503DTI14_105032F082560VSEKIIVKKIQEWFKLKGGVCHKVHGGPMSAGFPDIIGCIRGHTWVVEVKVPGAKPRVPKAKRNEAPQEMQEWLAKGATMLQAKTLYDWQNAGAVALV
DTI14_10693DTI14_106932F082560VSEKFVVKKIQEWFKSKGGVCHKVHGGPMSAGFPDIIGCIKGRTWVVEVKVPGAKPRVPKAKRNEAPQEMQEWLAKGATMLQAKTLYDWQNAGAVAL
DTI14_10711DTI14_107111F020881DIKATSIMQKNINDDVIATLLSVVKAIEFLPIFEEGFWSDFLSRWTNGTQTTNDVQLKHLMLQYITSCIEYRAVTTLSYQIRAAGVLSMNAENAVKVTDSERISLLNQLNSDKEFYKSQMLKFIQDNYYTHTNARAYKNFQIL*
DTI14_10900DTI14_109001F082560VSEKFVVKKIQEWFKSKGGVCHKVHGGPMSAGFPDIIGCIKGRTWVVEVKVPGAKPRVPKVKRNEVPQEMQEWLAMGATMLQAKTLYDWQNAGAVALVATSVEDMEQKFKEGQI*
DTI14_10961DTI14_109611F022008EALREALSDLSKQVQVLSEENRTSFGRIYDRLTKIETQMSERECQFKRYEKTIENHETRIRAVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGVGGLVATIIVKMLGE*
DTI14_10964DTI14_109641F103496MPFNDKIRKLPLTKLIALCFTIFTCVLIVLDVTSLCPLTERSADLLKWLGSTIIVGYFGKSSYEHKIDTTAGRKVN*
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