NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002842

3300002842: Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Junction Rte 99 and John Tyler Highway



Overview

Basic Information
IMG/M Taxon OID3300002842 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111381 | Gp0095385 | Ga0049951
Sample NameStormwater retention pond microbial communities from Williamsburg, VA - Sample from Junction Rte 99 and John Tyler Highway
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size522250
Sequencing Scaffolds19
Novel Protein Genes21
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia1
Not Available7
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1
All Organisms → cellular organisms → Bacteria3
All Organisms → Viruses → Predicted Viral2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameStormwater Retention Pond Microbial Communities From Williamsburg, Va
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond → Stormwater Retention Pond Microbial Communities From Williamsburg, Va

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → pond → stormwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationWilliamsburg, VA
CoordinatesLat. (o)37.260193Long. (o)-76.737526Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F013741Metagenome / Metatranscriptome268Y
F014132Metagenome / Metatranscriptome265Y
F016523Metagenome / Metatranscriptome246Y
F019966Metagenome226Y
F024310Metagenome / Metatranscriptome206Y
F027491Metagenome / Metatranscriptome194N
F031034Metagenome / Metatranscriptome183Y
F036664Metagenome169Y
F041636Metagenome159Y
F047566Metagenome149Y
F077217Metagenome / Metatranscriptome117N
F080975Metagenome / Metatranscriptome114N
F081081Metagenome114Y
F088887Metagenome109Y
F090385Metagenome / Metatranscriptome108Y
F091302Metagenome107N
F093302Metagenome106Y
F093838Metagenome / Metatranscriptome106Y
F101036Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
contig_10001All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia16048Open in IMG/M
contig_10009Not Available5998Open in IMG/M
contig_10017All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium3754Open in IMG/M
contig_10020All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces3574Open in IMG/M
contig_10023All Organisms → cellular organisms → Bacteria3327Open in IMG/M
contig_10029All Organisms → Viruses → Predicted Viral2953Open in IMG/M
contig_10031All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2825Open in IMG/M
contig_10061Not Available1765Open in IMG/M
contig_10071All Organisms → cellular organisms → Bacteria1576Open in IMG/M
contig_10128All Organisms → Viruses → Predicted Viral1136Open in IMG/M
contig_10146All Organisms → cellular organisms → Bacteria1050Open in IMG/M
contig_10152Not Available1034Open in IMG/M
contig_10174Not Available943Open in IMG/M
contig_10190All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes911Open in IMG/M
contig_10197All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage894Open in IMG/M
contig_10198Not Available890Open in IMG/M
contig_10226All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage841Open in IMG/M
contig_10245Not Available781Open in IMG/M
contig_10278Not Available696Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
contig_10001contig_100011F093302MLTVAQILDVAKISQYLATLDVEKGSLFGQRVVPETPQILYNERKAVEYWYNLDPSDSTLIETSNYLYALCRGYNLQAQQISGTGGTITPVNPTQIPNPYIFEVSASSIVPTGATSATLTAFIGFNVLFVRNGIPQSTLNLNGDSYFSWNKNLGLFTIHPAAVGGEIFQIYPI*
contig_10009contig_1000915F036664MYQRPNKISDLIEAIQSETEWLETSQGDEIECIGIENLEGILSRYFNTHIKLTQ*
contig_10017contig_100172F088887MPLWLRKTTFYMIKEYYDKQNEEAEKQQNMMKNKGKSEISRPNVTPKSTYTTKAD*
contig_10020contig_100205F047566MKNKLKTKLLNVYEVVAELTWRGFGIFLFILGGSAGVGAALTGSWINGVLVAWGTLMLGVVGAIGYAIAVTGRATREDVAKGSADAIQKAENQANKDTK*
contig_10020contig_100207F019966MMSDFEVSKEYKLEMLNKRLEALNIEGWHNEEAKLIAIATSNSEEQARLENNIEIIKNAIQAVKEQIQAL*
contig_10023contig_100236F077217MNHAIKDVIECKYTVKTFQERGYDEEVPIIGFAVEDLETVIKSVVLACADKVSDEQERRNILSLAS*
contig_10023contig_100238F027491MDDLQELHNDMMAEQERLEIALDKAEDGDMLTLAEIDLIRFHCGLPNKRRVNPVLTAIVDDFSNIFGGKQ*
contig_10029contig_100295F091302MKGISKAINHGIFQSRNYDAIVTMANDILMPNDWLGRMVQAMNTIPNSGMIGIHTVEGITEPVNINGIQVHLQDAVFGNVLIPMEAINKIGYFSEAYDPYGMQDRDYSYRLHMTGHLNYYLSGLRAEHIGHDVGQDTPYRKMKDEGLSRCDYLWAEQTKKYQDENNYTIFQSEYL*
contig_10031contig_100313F013741MSEQTPKPTTQGLLLQILRDVEVLKANSIQILRSSQDHEKRIRDLEKQANRNAWIPPLITAVVTSVLVYLISKGFTQ*
contig_10061contig_100614F101036MKNKKAKMKSLKRRMNRTAILSFYNKRTRRGDVQRLAEETGYSESHISNVKAGRRRITDDIADAMYYLSRRRVRQGEFA*
contig_10071contig_100713F081081LTDEEFKYQSGVRLLCKWRSEWGLAKFREYLSNHKLDSNLLNGFADQWKLGNKGNWGEWIE*
contig_10128contig_101283F014132MQINRDELYKLYMEWVEFISEECEWKTSFGPEEIVHSIANILEQNPQLINNGEYTQKNC*
contig_10146contig_101462F000368MDAKMKAMVATWARASIASAVALYLAGETDPKKLATAALAGFCGPLLKWLDPKEKQFGIGSKK*
contig_10152contig_101522F077217MNHLIKDFIDQKYTVKTFQERGYDEEVPIIGFAQDDLETVIKTVVQACADRVNNSEDRKAVLSLM*
contig_10174contig_101742F090385MSAQTDMKVISVLLDEAMEMGLEVEVIYSALKTMREDDSITPAQAFQEAINEWVK*
contig_10190contig_101903F016523MYVIVSPRIGTPGDPYKPQDGINVDALLEGGLISTDKPKKSSKVKAEPVEEK*
contig_10197contig_101971F024310MKIKVTELGPGYSIFGNKGNVWSDTAHIYQNGVGNMCGTPALSSNWAQIEQLEYVGCPKCIEAYTSQK*
contig_10198contig_101982F093838MVKTKRKMKRKVPVFRVTAEPGADYSVLTTFPEIKQAVLDEAIYAIKDGIEKHKSSISLFEIANSEYYIELSKEKWKPILEHLIEHYAEKEEYDKCVEVRDLISKL*
contig_10226contig_102264F041636MAQLTDDQIEEIVEKVTERVIEKVYTSVGKSVVQKIFWVVGLAAISLVTYFASIGHIKVGG*
contig_10245contig_102453F031034MALYKQGSADAQIKIGAGKLYGVYISSTSSGTFALYDTATGSTSDPKIVATVTPSAGTQHVSFPAGLWFSNGLYIDIGNTIEYT
contig_10278contig_102781F080975QEKLLRQATTQASKAQQVAKAKATAVSPKSVTPNGTQAKVEAKDRRSLLMAQMTEAESGRL*
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