Sample 3300002654

Basic Information
IMG/M Taxon OID	3300002654 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056644 \| Ga0005464
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF113 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF113 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	6259931
Sequencing Scaffolds	25
Novel Protein Genes	27
Associated Families	26

Dataset Contents

Total Genome Size

6259931

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	20
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Botryobasidiaceae → Botryobasidium → Botryobasidium botryosum	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Acalyptratae → Ephydroidea → Drosophilidae → Drosophilinae → Drosophilini → Drosophila → Sophophora → melanogaster group → melanogaster subgroup → Drosophila melanogaster	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Botryobasidiaceae → Botryobasidium → Botryobasidium botryosum

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Acalyptratae → Ephydroidea → Drosophilidae → Drosophilinae → Drosophilini → Drosophila → Sophophora → melanogaster group → melanogaster subgroup → Drosophila melanogaster

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → land → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.532967	Long. (^o)	-72.180244	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.532967

Long. (^o)

-72.180244

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001380	Metagenome / Metatranscriptome	709	Y
F002654	Metagenome / Metatranscriptome	539	Y
F004183	Metagenome / Metatranscriptome	449	Y
F005001	Metagenome / Metatranscriptome	415	Y
F016923	Metagenome / Metatranscriptome	243	Y
F016972	Metagenome / Metatranscriptome	243	Y
F018933	Metagenome / Metatranscriptome	232	N
F019794	Metagenome / Metatranscriptome	227	N
F021919	Metagenome / Metatranscriptome	216	Y
F023505	Metagenome / Metatranscriptome	209	Y
F024050	Metagenome / Metatranscriptome	207	Y
F024792	Metagenome / Metatranscriptome	204	Y
F030305	Metagenome / Metatranscriptome	185	N
F035144	Metagenome / Metatranscriptome	172	Y
F036049	Metagenome / Metatranscriptome	170	Y
F038248	Metagenome / Metatranscriptome	166	Y
F038563	Metagenome / Metatranscriptome	165	Y
F045560	Metagenome / Metatranscriptome	152	Y
F050386	Metagenome / Metatranscriptome	145	Y
F051291	Metagenome / Metatranscriptome	144	Y
F059015	Metagenome / Metatranscriptome	134	Y
F060406	Metagenome / Metatranscriptome	133	N
F062337	Metagenome / Metatranscriptome	130	N
F063716	Metagenome / Metatranscriptome	129	Y
F076700	Metagenome / Metatranscriptome	117	N
F089618	Metagenome / Metatranscriptome	108	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005464J37254_100140	Not Available	818	Open in IMG/M
Ga0005464J37254_100172	Not Available	598	Open in IMG/M
Ga0005464J37254_100236	Not Available	578	Open in IMG/M
Ga0005464J37254_100447	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Botryobasidiaceae → Botryobasidium → Botryobasidium botryosum	576	Open in IMG/M
Ga0005464J37254_100474	Not Available	507	Open in IMG/M
Ga0005464J37254_100495	Not Available	862	Open in IMG/M
Ga0005464J37254_100523	Not Available	581	Open in IMG/M
Ga0005464J37254_100569	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Acalyptratae → Ephydroidea → Drosophilidae → Drosophilinae → Drosophilini → Drosophila → Sophophora → melanogaster group → melanogaster subgroup → Drosophila melanogaster	533	Open in IMG/M
Ga0005464J37254_100796	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1406	Open in IMG/M
Ga0005464J37254_100969	Not Available	822	Open in IMG/M
Ga0005464J37254_101363	Not Available	695	Open in IMG/M
Ga0005464J37254_101409	Not Available	697	Open in IMG/M
Ga0005464J37254_101744	Not Available	543	Open in IMG/M
Ga0005464J37254_102255	Not Available	810	Open in IMG/M
Ga0005464J37254_102373	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	2311	Open in IMG/M
Ga0005464J37254_102408	Not Available	578	Open in IMG/M
Ga0005464J37254_102448	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1839	Open in IMG/M
Ga0005464J37254_103488	Not Available	543	Open in IMG/M
Ga0005464J37254_103986	Not Available	806	Open in IMG/M
Ga0005464J37254_104781	Not Available	516	Open in IMG/M
Ga0005464J37254_105389	Not Available	567	Open in IMG/M
Ga0005464J37254_105828	Not Available	718	Open in IMG/M
Ga0005464J37254_106060	Not Available	588	Open in IMG/M
Ga0005464J37254_106262	Not Available	716	Open in IMG/M
Ga0005464J37254_107267	Not Available	520	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005464J37254_100140	Ga0005464J37254_1001401	F024792	VTGERLSQAGWLNPSKSASQGAETGGRIHQFLWRRSHAVSDAKQELSGKGLN*
Ga0005464J37254_100172	Ga0005464J37254_1001721	F004183	MERLRGANEDRANSEGGPNGCEAYQRVDPEGAKTPEGERRQAAQPAEQAGTECNGLEAWMQPEAGANQQLAAESKSRTSRKTGRQVSEVAGQEL*
Ga0005464J37254_100236	Ga0005464J37254_1002361	F089618	LPLPPLAAPVSNIRLASAALPPARPRANPPARIGVFSPGSTGGKHPACTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNLRLAPAAAAAPTRAGGCPLLPHRPRTSDSHRLLFCRLCRSRLTQLALRALTSGWAFDAPLASTEPCIAG*
Ga0005464J37254_100447	Ga0005464J37254_1004471	F001380	PGFTVRFSDPSACGRSLCNKMLRINSSSLSAAAFQHAAGHSNQQIFVGLSTLPEPESRYGLSLAHNDAFATIARSMFLACTFVSTSKSFANPFDSRLFRSVRFRGRTGATSMPGTRFPLHPSILRIHPQSPLPFRPSFENPSDQSVRPVQNPEARLTRRPIASSYSPPLPLAIPLRISARNSLRLSLTYRS
Ga0005464J37254_100474	Ga0005464J37254_1004741	F004183	GANEDRALPEGGPNGCEASQGFDPEGVKTPRGELRQAAQPAKQAGKECNGFEAWMQPEAGANQPLVAESKSRTGRKTGKQVSEVAGQDL*
Ga0005464J37254_100495	Ga0005464J37254_1004951	F030305	VFRMPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEAPSCPGSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPVRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVAFRVSPDLPPSDICRFRFSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKFPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFARRRTGLLRTTINQF
Ga0005464J37254_100523	Ga0005464J37254_1005231	F059015	SRVHGTIQRPVCMRTFALQPDVRDKTTHRSPSPLFSMRQVIALSRLQHASLSD*HPAGAGSSIRPFARSQRRFRHHCEVNVPGLHLRFHIENLCESVRLQALSLRSVSRPNRGAVNAQNPLSAPISNTPDLSPISTPLQVLLRKPSGSKRSTGSISGNPSYQTFDCPLLPATSSFDSATDQRLKLASFGLTYR
Ga0005464J37254_100569	Ga0005464J37254_1005691	F021919	FQVTRSRSQTPRRHATAQSFASRIAGRHPFGSPPRFFKRNGSIPRGSPASFPSWNRHLEAAFHSPETTARFQATISRSKLPTYSFDTLPCIRPARSDPDSPTRPGSPRRAQDHYRNPVA*LLPGTSNPSSDLHSPSGPFEPLRIKAFNPIPGRKVHLPSAPDCPSLPNIESILLVRC
Ga0005464J37254_100796	Ga0005464J37254_1007961	F002654	MLNNQTFNDKVVCLKGNSPEQVFKVPKLLLSESKEVFKSYNQEIGLEAAIF*
Ga0005464J37254_100969	Ga0005464J37254_1009691	F045560	PRRAKSDERKMAQVSGIIPGDWGKVRPGWLAGLLLKEAARHISGGRIHQFLWQRSRAVSKREKGTER*
Ga0005464J37254_101363	Ga0005464J37254_1013632	F024050	PVAPASSCSARDEGLELPLVPHLRLHRQWIVESPRLSHLSAVPTGQSSSRPESRPFGIADDSSPRLPQTPNPPVPADRYPSYLGSRTIRFALVESPGCPGHSPLATAIDQFPGCPKSRVFRRSPILLNSSRPEPWFLG*
Ga0005464J37254_101409	Ga0005464J37254_1014093	F063716	VRNSNLRVKRRDPWQGANALPKAAADPVLMVKTRTRIAGVS*
Ga0005464J37254_101744	Ga0005464J37254_1017441	F076700	LITRSTAGVASSSYPSGRSPAFAGAGSSGCAGTVALTCVNALHSGSTGGQPPGSDRFRVLRLDRLQTSDSHRLFRASDRPVVTRSTCVEPSFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLEWLRFQFAPAASPFAFTGREPLGLRLVAPSPAEPLMHSLFPPNLASPAKPSMSI
Ga0005464J37254_102124	Ga0005464J37254_1021241	F016923	FQVTRRSARSPAGMHGQNLASGNGVTALCSPRPILFSYGSMLWCASAFTRSGRSSILDTAFCSPAATADLSVRPRSRVNAPGLYLRTDPKIYARPVRLRAPAPVVAFLSPSGARSSHVARCQVRNQNSLSVLKPPLPSRTSQSFGIVALNLIPTREAYPCELPDFLSLPAAL
Ga0005464J37254_102255	Ga0005464J37254_1022551	F018933	SRVAGLSLCCSRRSRIAPRSTLDSLYRPRIAPLPVLIDRCCPPIARRSTLNALPRSQIAPRSILCARGDLGLLLVHHLEPSPRLRIAPYSTLCFPLRSQIALRSVLPALCRSRIAPRSTIDAQCRSTDISVRLHSAPRAVHGSLRAQHFMLRAVHRLLCVRRLHFARFADCSALLASCLVSHADCSVLDT*
Ga0005464J37254_102373	Ga0005464J37254_1023732	F050386	LRGPRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY*
Ga0005464J37254_102408	Ga0005464J37254_1024081	F005001	QVTFPAWLTTGMHGIELREQERRTIRLSAPRWPFSPAAGSMLPGSPLAASCPEPVARNGFSLARNSCRLSATSIPGSKLPACYFASFQVGFRARSTFRLHYRVPDCAGCGGFIACGPLHCHHSVRPAAPAISTPLRDFCLPRDQSVQPRLLPAGPPGESARFPFAPRRPSLKFGLRIIVPGPLRFRRLAV
Ga0005464J37254_102448	Ga0005464J37254_1024482	F016972	VRLTPLTDEIPVVNLYLTINVTDRVSFGAKTSRYGPYELGYRRATKSFTK*
Ga0005464J37254_103488	Ga0005464J37254_1034881	F038563	TSCANTYFSWKITSIDHRSMANNNRRRRRNRGAGASTLPGPSRFIAPVQAKDGQSLIVKVTKPEEGVPKQVSATHYSVTLKGTQGQMILHGSRCANTWTTGKIPVGDWKDVYVQVSSDDTVALTSVIWYSAQ*
Ga0005464J37254_103535	Ga0005464J37254_1035351	F062337	PTSGSTAGQPSGSDRCCLAWLGQWQVLSFRCVLRAADRLAADLPTCVGVRPPARPAITTDSHLALSFSSAGLSASGSHRLPLQQLACAGCCCNPQLALAVATFRHTGGVLPTRIGCSALRLYRFRITRLAPCASTSGWAFDAPLTSTEPCIAGKPSMSIPYPPVRASSGSASLTTFDLRRLLQSLAQPAIPLRL
Ga0005464J37254_103986	Ga0005464J37254_1039861	F019794	SVVQPVLRPPATPETSLQLALPLPPLAAPASNLRLASAALRPARPGANPPARIGVLSFGSTGGKRRAFAVCIALPFVRWLTFQLALASFLRLGRRPTADSHLVLILQLGSCPTSGSHRLLLQPSACASCCYDSPACAGRRPFAIPAANFRLASDVTPSSFTGFDSPDLRRMFLPPVGPLMHPLLQPNLASPAEPSMSIQSPPVLAPSGSASFNNLRLASVFAMSGATSDPSAAFASGFTLWLGLRRFSDSRQLFVPPAIPATNSQCPT
Ga0005464J37254_104781	Ga0005464J37254_1047811	F036049	ISGGCDDRRLPVVALGTPLLAMVLFVGGSPRGPTYTVRSGCSVEIDAACPSGPGNPTDFIVRNFTDVGLAGLEIPASQLLLPTDPSEMAIHHGFLPWKEASWRLQQRSDTRLVTQTCVGEVAKLHLSSALTDLNWLKVQLWQIPSLQPQRCAIAPTVCLTDC*
Ga0005464J37254_105389	Ga0005464J37254_1053891	F060406	LGELNSTTGCRVLRLPQRPTPSFRLRSRPLAAPARCFRLASTASHSGSTGGRLSRLGSAFCRSARSVANLRFASALRTAVRPLADLPACAGVLPQARPRTNFRLTSDLDSSARLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGEPPTRIGCPSSGFTGFDSLGLRLVLLPPAGLLMHP*
Ga0005464J37254_105828	Ga0005464J37254_1058281	F038248	SALLPTDLRLASPINLPACLRPTSDSHRNLCLPASPSDQPPTCAGCRLFGLCLPACLQLAPSTCLRALPSDLPLARAADPSSGSAFQLNFRLSIGYCIFQLRLFEAASGLRRTLRSVALPSGLLPACALCRPSGFTFRLTVDSRRPSVFQICLPSNFRLSSKSGSQRSLRWTFDLRRRSFFRPAFEPISDFCRISNSWTSPSDSSPACASYQSSKLCLPTYLWLAPPICLPALPSCLP
Ga0005464J37254_106060	Ga0005464J37254_1060601	F023505	LDNGGGRKKVVGLPGIIPGDWGKVEPGWLVEPLEARFARSGNRWHNSPVPLAAFVRRQ*
Ga0005464J37254_106262	Ga0005464J37254_1062621	F051291	MNSKQRVLSNRDVFPPAVSWRARRGTEPSRAPVVLIVDEDLGFVWWLGQMFSEAGCQVVPALNPEQTDSFAQNLNVDVIVVNPELAGVPELIRGMSSPRPPKIVAIRNHNSGVRSGVRADATLERPSGWGNVSQNEWLGCVRRLVRDVQATRVAYPQCS*
Ga0005464J37254_107267	Ga0005464J37254_1072671	F035144	VTHKFSRLVLFSASAMVISMFTLAAAPCTPGTLASYIALGSTGCTVGNDTFFNFQLINDNASGGATMVTAADINVQGMGPAGTMGASSQNSFLPQDIGVDFDTALWAVTAGQSQDDDISFDVSVGTGAVDITDAGVDQISNTVPNGTASVTEKGCSGLVFPCAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002654: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF113 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences