NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002531

3300002531: Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-D



Overview

Basic Information
IMG/M Taxon OID3300002531 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110114 | Gp0061314 | Ga0006565
Sample NameIonic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-D
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size259866220
Sequencing Scaffolds19
Novel Protein Genes19
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria8
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000911Metagenome / Metatranscriptome840Y
F001784Metagenome / Metatranscriptome635Y
F003125Metagenome / Metatranscriptome506Y
F004821Metagenome / Metatranscriptome422Y
F007999Metagenome341Y
F016304Metagenome / Metatranscriptome248Y
F018530Metagenome / Metatranscriptome234Y
F026032Metagenome / Metatranscriptome199Y
F036417Metagenome / Metatranscriptome170Y
F053502Metagenome / Metatranscriptome141Y
F054879Metagenome / Metatranscriptome139Y
F064351Metagenome128Y
F079734Metagenome115Y
F090842Metagenome / Metatranscriptome108Y
F098955Metagenome / Metatranscriptome103Y
F100368Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI25327J35509_1000058All Organisms → cellular organisms → Bacteria78175Open in IMG/M
JGI25327J35509_1000619All Organisms → cellular organisms → Bacteria → Proteobacteria29619Open in IMG/M
JGI25327J35509_1002028All Organisms → cellular organisms → Bacteria14669Open in IMG/M
JGI25327J35509_1002686All Organisms → cellular organisms → Bacteria11986Open in IMG/M
JGI25327J35509_1004106All Organisms → cellular organisms → Bacteria → Proteobacteria8503Open in IMG/M
JGI25327J35509_1004695All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi7522Open in IMG/M
JGI25327J35509_1008199All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia4567Open in IMG/M
JGI25327J35509_1008233All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium4549Open in IMG/M
JGI25327J35509_1008323All Organisms → cellular organisms → Bacteria4508Open in IMG/M
JGI25327J35509_1008882All Organisms → cellular organisms → Bacteria4230Open in IMG/M
JGI25327J35509_1010774All Organisms → cellular organisms → Bacteria3489Open in IMG/M
JGI25327J35509_1011186All Organisms → cellular organisms → Bacteria3366Open in IMG/M
JGI25327J35509_1015558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium2467Open in IMG/M
JGI25327J35509_1040497All Organisms → cellular organisms → Bacteria994Open in IMG/M
JGI25327J35509_1045585All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi897Open in IMG/M
JGI25327J35509_1050666All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces820Open in IMG/M
JGI25327J35509_1054153All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria775Open in IMG/M
JGI25327J35509_1075244All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium594Open in IMG/M
JGI25327J35509_1083862All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium546Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI25327J35509_1000058JGI25327J35509_100005819F036417VTCASTRCINRYGPLPIIDMVYYARVPLRKKIPTVLVRLDTDDGVVTFRARWHRSALELQRAILFRLRQGHPLWFEDEWGHSHCFKPERVWGALVDGR*
JGI25327J35509_1000619JGI25327J35509_10006199F001784MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAARNGIQVAMMHSVEALMNSIYDLCTSKLQQPEL*
JGI25327J35509_1002028JGI25327J35509_10020283F018530MIQGLPGVSQTTRDFVQLVRLFLRDFPELNRLIAGVESTDRQIAWAIMDALADFNGTPPFTTFTLDDLLYRNQHNLMLRMTVISILESVAMLQVRNHINYSNGGITVGVNDKAPELMRWLQYFKATTDQMKQRVKVALNIEGILGSSNMGVSSEYWAVNSTYAAY*
JGI25327J35509_1002686JGI25327J35509_10026862F000911MSISMEKFASHGHFATYDPFGRSDRGTTIFQLQCRSCGYEADNAVSAPSFCPKCHSEAWERFVRPGSILENAARY*
JGI25327J35509_1004106JGI25327J35509_10041066F026032MFCEGYDPAFPTDLRRMTTGIGGWQADDPPTIELTLAVGLWSLEAGRIACRFGIRRPGDDVVYFGEGDTTVDEPGEMAIMPLRLTVTLDRPGVYWAICEFDGRPLVQVPFSVSEAPPPAAGGQPAPLP*
JGI25327J35509_1004695JGI25327J35509_10046954F079734MTVRIYLQAARLLPGPPQAGDLPAERIFIHASDVPELWVETESIAVPPPGRAVSFALARPLDIGIGRVVGTIERAVRKSTKQRLNIAR*
JGI25327J35509_1008199JGI25327J35509_10081991F100368MALLVGGKLRKATSGVDRSQAGCSSWGSDPVKEIGQTCGLNVIVRRASDLE*
JGI25327J35509_1008233JGI25327J35509_10082332F036417MVYYARVPIRQLIPTVLVRLATDEGEVVFRARWKRSPLELQRSILFRLRQGSHLWFENESGHAICFKPESVWGAVVDGR*
JGI25327J35509_1008323JGI25327J35509_10083236F064351MMPNQSAAANGLSAFRSSVAGIRERTVRSTAAAEAVAELDR*
JGI25327J35509_1008882JGI25327J35509_10088826F098955MDPSAIPVFLAGPFPVLHSANVLDREAEVQLDVGLIIGGLPTILAATSFPLDETWDRVEAALSSGDARLGVAGIPHQVESEIGETEVFPSAYIGLECANGERLILAHIRGPDRKQDPEAYAREVIAALLNGQTPAELGELIED*
JGI25327J35509_1010774JGI25327J35509_10107745F090842MVQRFLDVVLRRERVEPDVPICPDHKTEMRLRGKLGRPTRFSHQTEEEYTLIYFCPVEGCNNTAMVERVRTQIPVPGEAPERPPFARRG*
JGI25327J35509_1011186JGI25327J35509_10111861F003125MDPFRILKETWSVGDTIEVEAYRVERQVGLEYDSYRRVYLAHGHEWQIAGQIAKDDGKKYYLLECVA*
JGI25327J35509_1015558JGI25327J35509_10155581F007999ARDGRVTGRGVAAVDEAWERRLARAARARANLVAALRECCELADAVEAFEGEELLEVLSHLDGLRFVMAESAQILQGVVRGLEAYEK*
JGI25327J35509_1040497JGI25327J35509_10404972F016304MRPVLVGFALVADAFVVAALAVARPGGWVAPLVAFGVALVGFAWLWGWSVRHRNDDKPGG
JGI25327J35509_1045585JGI25327J35509_10455852F054879MLDLPANDTRVFLFHSPHAAADPGAAMDKVNAWLGKDRSTTPYANLRIKDISITSDGQGGVYTLIVCSLG
JGI25327J35509_1050666JGI25327J35509_10506662F004821MSKRAGRTTFVSRGRLIGLVRDEHPAGTGQNHTSRLDNRDPGNAADEALFYRARLILGDAVPRPRR*
JGI25327J35509_1054153JGI25327J35509_10541532F053502MSISGLLSLLLALIAALLLVLYWLQRRELKAMGQLTQQLQRIAIGGRLDRRIE
JGI25327J35509_1075244JGI25327J35509_10752441F036417MVFYARIPLRELVPTVLVRLATDDGEIVFRARWKRSPLELQRSILFCLRQGSMLWFEDEWGHALCFRPERVWGAMVDGR*
JGI25327J35509_1083862JGI25327J35509_10838622F036417MVYPARVPLRHRIPTVLVRLATDDGEVVFRARWKRSALELQRNILFRMRRGSPLWFEDEWGHDLCFRPECVRAAMVDGR*
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