Sample 3300002225

Overview

Basic Information
IMG/M Taxon OID	3300002225 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0090292 \| Gp0056878 \| Ga0005105
Sample Name	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Santa Barbara Oil Seep Sample 6
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	572391776
Sequencing Scaffolds	15
Novel Protein Genes	17
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Santa Barbara Channel Oil Seeps
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → oil seep → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	Coal Oil Point, Santa Barbara, CA
Coordinates	Lat. (^o)	34.39225	Long. (^o)	-119.845662	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008497	Metagenome / Metatranscriptome	332	Y
F048322	Metagenome	148	Y
F052606	Metagenome	142	Y
F057876	Metagenome / Metatranscriptome	135	Y
F079616	Metagenome	115	Y
F084254	Metagenome / Metatranscriptome	112	Y
F094909	Metagenome	105	Y
F102576	Metagenome	101	Y
F103884	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F008497

Metagenome / Metatranscriptome

332

F048322

Metagenome

148

F052606

Metagenome

142

F057876

Metagenome / Metatranscriptome

135

F079616

Metagenome

115

F084254

Metagenome / Metatranscriptome

112

F094909

Metagenome

105

F102576

Metagenome

101

F103884

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
JGI24723J26617_10012185	All Organisms → cellular organisms → Bacteria → Proteobacteria	4452	Open in IMG/M
JGI24723J26617_10022182	All Organisms → cellular organisms → Bacteria	2807	Open in IMG/M
JGI24723J26617_10027391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2388	Open in IMG/M
JGI24723J26617_10029722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2243	Open in IMG/M
JGI24723J26617_10043087	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1667	Open in IMG/M
JGI24723J26617_10047310	Not Available	1544	Open in IMG/M
JGI24723J26617_10053289	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1404	Open in IMG/M
JGI24723J26617_10055981	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
JGI24723J26617_10074690	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
JGI24723J26617_10078893	Not Available	1032	Open in IMG/M
JGI24723J26617_10088541	Not Available	947	Open in IMG/M
JGI24723J26617_10121719	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
JGI24723J26617_10122342	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
JGI24723J26617_10168984	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
JGI24723J26617_10170906	Not Available	599	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI24723J26617_10012185

All Organisms → cellular organisms → Bacteria → Proteobacteria

4452

Open in IMG/M

JGI24723J26617_10022182

All Organisms → cellular organisms → Bacteria

2807

Open in IMG/M

JGI24723J26617_10027391

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

2388

Open in IMG/M

JGI24723J26617_10029722

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

2243

Open in IMG/M

JGI24723J26617_10043087

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium

1667

Open in IMG/M

JGI24723J26617_10047310

Not Available

1544

Open in IMG/M

JGI24723J26617_10053289

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae

1404

Open in IMG/M

JGI24723J26617_10055981

All Organisms → cellular organisms → Bacteria

1349

Open in IMG/M

JGI24723J26617_10074690

All Organisms → cellular organisms → Bacteria

1076

Open in IMG/M

JGI24723J26617_10078893

Not Available

1032

Open in IMG/M

JGI24723J26617_10088541

Not Available

947

Open in IMG/M

JGI24723J26617_10121719

All Organisms → cellular organisms → Bacteria

754

Open in IMG/M

JGI24723J26617_10122342

All Organisms → cellular organisms → Bacteria

751

Open in IMG/M

JGI24723J26617_10168984

All Organisms → cellular organisms → Bacteria → Acidobacteria

604

Open in IMG/M

JGI24723J26617_10170906

Not Available

599

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI24723J26617_10012185	JGI24723J26617_100121853	F103884	MIVKETTDLDEIKAVLCDPAIYDTITDDNSGLIEDFKPTLEDHLYVGGYVNGEIVALMVYHKYLDGNKCHVQVLPEFRKEYALKFGEQSLLFRGTLPLYAVIPDLYKNVLEFSFLFGFKTIDKTENTYVKNGKSYNDNILRL*
JGI24723J26617_10022182	JGI24723J26617_100221823	F094909	LWYIYCYLLVGMVNKKVLDWIEGYVLSRVLILGDFVGTVKRSDLIFDLDTTSDHFRKFEGQRIQSLSLPVKSRNLSTLLGEIEARFQKGWILMDNGEWTEADFNQVFDLSRQISEEIVVLRKQLKDGAPEPYYPLAEPTRDK*
JGI24723J26617_10027391	JGI24723J26617_100273914	F048322	MLWWLQKMQEYWWYVEAFRKRPERKDLVQIAGENRSI*
JGI24723J26617_10029722	JGI24723J26617_100297222	F102576	MYNKIKKSFRIKLNSQGAAKSGGITMNDLLMLDKYFPDGNLEGGVDLANRLGWGISVQMAGDGYVVSSGDEPILRTEHKDALQSFIYGLGLAYAILPEKVFVSLENALKDL*
JGI24723J26617_10043087	JGI24723J26617_100430872	F048322	MRCAKSLMLWCLQKMQEYWWYAEAFCKRPERKELVQIAGENRSI*
JGI24723J26617_10047310	JGI24723J26617_100473101	F048322	LWCLQEMQEYWWYVEAFCKRPERKELVQIAGENRSI*
JGI24723J26617_10053289	JGI24723J26617_100532892	F079616	MEGSFKIGDVVVCINAKRRWFKLGGLKENEMYTIIGFNPYDGGLILNEVKSPRSGHNAYAVNRFRKVDYNFANSVIKTLQTRVLRQVILN*
JGI24723J26617_10055981	JGI24723J26617_100559812	F048322	MKCAKSLMLWCLQKTQEYWWSVEAFCKRTERKELVQIA*
JGI24723J26617_10074690	JGI24723J26617_100746902	F048322	MRYTKSLMLWCLQKMQEYWWYVEAFCKRPERKESVQIAGENRSI*
JGI24723J26617_10078893	JGI24723J26617_100788931	F008497	MRGNVYMCLDNTTFNKLIPTELVATYGIPEYDEEGTQNGVIHPTFKELGEYNRRKFGANPMVKIGKAKFHIIELEASWLDGELSALLDLGKGKEYPNNCLMTRTEASQFVSSNSGDLDA*
JGI24723J26617_10088541	JGI24723J26617_100885411	F048322	MRCTNSLMLWFLQKTQKYWWDVEAFCKYPERKELVQIA*
JGI24723J26617_10121719	JGI24723J26617_101217191	F048322	WCLQKMQETWWYVEAFCKRPERKELVQIAVENRSIQVQD*
JGI24723J26617_10122342	JGI24723J26617_101223422	F048322	MGCGNSLMLWCLQKTQEYWWYVEAFCKRPERKELVQIAGENRSI*
JGI24723J26617_10144639	JGI24723J26617_101446392	F052606	DILIGQGDEISQFGHYKLDTYAVDPNTSSYYIATITYIGGNGVIAQQGTQYTVIDFNITGADVNLKQNFTASSQWVINNTTGKPEPSVTLIDTNDEEIYGAVEYTTATTITVDFNTNIAGSSILN*
JGI24723J26617_10156879	JGI24723J26617_101568793	F057876	EQLIKQIKENKELHIKEFEEAKILYKEEALKQLMNLKSKVVANHLGIHLDLITPVDNSDNYDKIIQMFEWEVEKEVELEQNEFTEYVQDETDFAVTAKMSNSAYMVKGF*
JGI24723J26617_10168984	JGI24723J26617_101689842	F048322	SLMLWCLQKMQEYWWYVEAFCKRPERKDFVQVAGGNRSV*
JGI24723J26617_10170906	JGI24723J26617_101709062	F084254	IVIEILAEVIRQSQRHPRADQVASALAMRGLPIAEKDVMIVFDQYDIEKKTPDSHYFDT*

Scaffold ID

Protein ID

Family

Sequence

JGI24723J26617_10012185

JGI24723J26617_100121853

F103884

MIVKETTDLDEIKAVLCDPAIYDTITDDNSGLIEDFKPTLEDHLYVGGYVNGEIVALMVYHKYLDGNKCHVQVLPEFRKEYALKFGEQSLLFRGTLPLYAVIPDLYKNVLEFSFLFGFKTIDKTENTYVKNGKSYNDNILRL*

JGI24723J26617_10022182

JGI24723J26617_100221823

F094909

LWYIYCYLLVGMVNKKVLDWIEGYVLSRVLILGDFVGTVKRSDLIFDLDTTSDHFRKFEGQRIQSLSLPVKSRNLSTLLGEIEARFQKGWILMDNGEWTEADFNQVFDLSRQISEEIVVLRKQLKDGAPEPYYPLAEPTRDK*

JGI24723J26617_10027391

JGI24723J26617_100273914

F048322

MLWWLQKMQEYWWYVEAFRKRPERKDLVQIAGENRSI*

JGI24723J26617_10029722

JGI24723J26617_100297222

F102576

MYNKIKKSFRIKLNSQGAAKSGGITMNDLLMLDKYFPDGNLEGGVDLANRLGWGISVQMAGDGYVVSSGDEPILRTEHKDALQSFIYGLGLAYAILPEKVFVSLENALKDL*

JGI24723J26617_10043087

JGI24723J26617_100430872

F048322

MRCAKSLMLWCLQKMQEYWWYAEAFCKRPERKELVQIAGENRSI*

JGI24723J26617_10047310

JGI24723J26617_100473101

F048322

LWCLQEMQEYWWYVEAFCKRPERKELVQIAGENRSI*

JGI24723J26617_10053289

JGI24723J26617_100532892

F079616

MEGSFKIGDVVVCINAKRRWFKLGGLKENEMYTIIGFNPYDGGLILNEVKSPRSGHNAYAVNRFRKVDYNFANSVIKTLQTRVLRQVILN*

JGI24723J26617_10055981

JGI24723J26617_100559812

F048322

MKCAKSLMLWCLQKTQEYWWSVEAFCKRTERKELVQIA*

JGI24723J26617_10074690

JGI24723J26617_100746902

F048322

MRYTKSLMLWCLQKMQEYWWYVEAFCKRPERKESVQIAGENRSI*

JGI24723J26617_10078893

JGI24723J26617_100788931

F008497

MRGNVYMCLDNTTFNKLIPTELVATYGIPEYDEEGTQNGVIHPTFKELGEYNRRKFGANPMVKIGKAKFHIIELEASWLDGELSALLDLGKGKEYPNNCLMTRTEASQFVSSNSGDLDA*

JGI24723J26617_10088541

JGI24723J26617_100885411

F048322

MRCTNSLMLWFLQKTQKYWWDVEAFCKYPERKELVQIA*

JGI24723J26617_10121719

JGI24723J26617_101217191

F048322

WCLQKMQETWWYVEAFCKRPERKELVQIAVENRSIQVQD*

JGI24723J26617_10122342

JGI24723J26617_101223422

F048322

MGCGNSLMLWCLQKTQEYWWYVEAFCKRPERKELVQIAGENRSI*

JGI24723J26617_10144639

JGI24723J26617_101446392

F052606

DILIGQGDEISQFGHYKLDTYAVDPNTSSYYIATITYIGGNGVIAQQGTQYTVIDFNITGADVNLKQNFTASSQWVINNTTGKPEPSVTLIDTNDEEIYGAVEYTTATTITVDFNTNIAGSSILN*

JGI24723J26617_10156879

JGI24723J26617_101568793

F057876

EQLIKQIKENKELHIKEFEEAKILYKEEALKQLMNLKSKVVANHLGIHLDLITPVDNSDNYDKIIQMFEWEVEKEVELEQNEFTEYVQDETDFAVTAKMSNSAYMVKGF*

JGI24723J26617_10168984

JGI24723J26617_101689842

F048322

SLMLWCLQKMQEYWWYVEAFCKRPERKDFVQVAGGNRSV*

JGI24723J26617_10170906

JGI24723J26617_101709062

F084254

IVIEILAEVIRQSQRHPRADQVASALAMRGLPIAEKDVMIVFDQYDIEKKTPDSHYFDT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002225: Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Santa Barbara Oil Seep Sample 6

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences