NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002103

3300002103: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-33A



Overview

Basic Information
IMG/M Taxon OID3300002103 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0084162 | Gp0055560 | Ga0004693
Sample NameArctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-33A
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size219931192
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium RBG_19FT_COMBO_42_71
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameArctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)polar biome → polar → peat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationBarrow, Alaska, USA
CoordinatesLat. (o)71.290884Long. (o)-156.788063Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010804Metagenome / Metatranscriptome299Y
F014092Metagenome / Metatranscriptome266Y
F029737Metagenome187Y
F053933Metagenome / Metatranscriptome140Y
F077208Metagenome / Metatranscriptome117Y
F088782Metagenome109N
F092955Metagenome107Y
F096256Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24147J26652_1001785All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales8525Open in IMG/M
JGI24147J26652_1006857All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3436Open in IMG/M
JGI24147J26652_1009467All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium RBG_19FT_COMBO_42_72759Open in IMG/M
JGI24147J26652_1031017All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1222Open in IMG/M
JGI24147J26652_1034921All Organisms → cellular organisms → Bacteria1115Open in IMG/M
JGI24147J26652_1050121All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans842Open in IMG/M
JGI24147J26652_1068919Not Available655Open in IMG/M
JGI24147J26652_1087782Not Available542Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24147J26652_1001785JGI24147J26652_10017855F096256VGGSSAHDVAKVTAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAISKFTQVTPKTYVGTYADEKGQSWNFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIALGTGQTVFGRIDEKWYGYKASDSENPALYALLFGYDENAASWVVATVASGAIITTKTTTALS*
JGI24147J26652_1006857JGI24147J26652_10068574F014092MKKLLIVIALFIAVMAVNAQVINTTDSTRTVVKVADLQKAITDNIAKDYVGYTIKEATSVTANNIVTFEVVVVKGTATXVLVYDKEGIFVKKLPPVPKK*
JGI24147J26652_1009467JGI24147J26652_10094672F077208MVEFNVNKSLLSDSAFVSKTGFSIYPPKNWLKTENYNSQLQKRILYRLDNKLLSIYKSDTTNCALIISELPETTFDILKGLLIKSNSFPNHDSLWINVQSSIFKYKNYEIIQIVSQNSEMIIFKLFTHRLSELYELDYIIPRSEINIKMQSVESSIGSLN*
JGI24147J26652_1031017JGI24147J26652_10310173F029737MTEFEFLEKLEASQKSFEKLNYIFIRXMHKYIRKSTVYDSTFFKTIINFSANITLTAEWIRLLKDFNSDKYNNILRFSPDFNHSTGVPDAIKKSAGQQHQR*
JGI24147J26652_1034921JGI24147J26652_10349212F010804MKYKILFEFSGKKHRWFSLLLLSLISIIAXGQNTDYITLKPLKVETNNLIVSVDATTCRWSAKVKGTAMQINDAFFLPGDDPSGWTITSFVNDDDNNNLGSFTTVTLHGTKPGQLDFDYLISLSKNENDILISLGRTNNTDKDVDIDDMDYFISRDVRLGSTCDRWISLGTQSRNRDLYELLSVINLITPKTYAVNHVVKDNDTGNSLLMGHVTTIKGASRFDGRTGWKGKTPDRMQVRGYCSYKVTMPPGKSFPGEKLLICFNHDALRAMEHQADLIAIAHDVRLK
JGI24147J26652_1050121JGI24147J26652_10501212F053933YVPEGFSVKRAVLSDGLKASINTDGNLLTVDYNSSTGKDVEWKIFF*
JGI24147J26652_1068919JGI24147J26652_10689191F092955MKKFLVSFLVFSGLIFPLLAQVDHDYNANDRVPIVNTTITKEQVPASVLKAAQTQFDLSNSATWSKFPYALKEYGWVYDVGASDIQLDRYEVTMKNKEGHELFAVYDAKGELVESRELANNVAMPANV
JGI24147J26652_1087782JGI24147J26652_10877821F088782PSRFQXXAGNLCCLYRDHIMSWLDLPPLELIGAAPDPVVTPEENGLVKGMLGLVAGGLVGFWTTSTVEIWHPDNPAALAAILGVGEVERMDTGTGFAECGLFDREKKVLRVRNRNPQSGPPRVFPGRTTGVPNPDLDPRAVWQLTHMVDVALRRDERWALAPGGHGSSDYSLGLETGPWQ
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