NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001682

3300001682: Cattle waste upflow reactor



Overview

Basic Information
IMG/M Taxon OID3300001682 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095549 | Gp0055760 | Ga0012545
Sample NameCattle waste upflow reactor
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size627196950
Sequencing Scaffolds7
Novel Protein Genes12
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActivated Sludge Microbial Communities From The University Of Illinois, Usa, From Bioreactors Seeded With Cattle Waste
TypeEngineered
TaxonomyEngineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Activated Sludge → Activated Sludge Microbial Communities From The University Of Illinois, Usa, From Bioreactors Seeded With Cattle Waste

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: University of Illionis
CoordinatesLat. (o)40.103885Long. (o)-88.225087Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039153Metagenome / Metatranscriptome164Y
F046098Metagenome / Metatranscriptome152Y
F051061Metagenome / Metatranscriptome144N
F059692Metagenome / Metatranscriptome133N
F061390Metagenome / Metatranscriptome132Y
F069434Metagenome / Metatranscriptome124Y
F071725Metagenome122N
F076577Metagenome118N
F084897Metagenome / Metatranscriptome112Y
F093482Metagenome106N
F099347Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SAHD_10000881All Organisms → cellular organisms → Bacteria60469Open in IMG/M
SAHD_10002187All Organisms → cellular organisms → Bacteria59330Open in IMG/M
SAHD_10002991All Organisms → cellular organisms → Bacteria32326Open in IMG/M
SAHD_10014773All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium5303Open in IMG/M
SAHD_10015939All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium4907Open in IMG/M
SAHD_10025190All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales5826Open in IMG/M
SAHD_10055135Not Available1765Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SAHD_10000881SAHD_1000088110F084897MGKKKSDAFVKTSKKRFEVADASEVRLGVGGNFRAEQIGTLGGDSGDVQ*
SAHD_10002187SAHD_1000218750F046098MRIILILAAIVLLIVGILGLFPSVGWAAVPLWRAILEIVVGGLVLIVGIRKR*
SAHD_10002991SAHD_1000299111F093482VEERTLDELWERIEKEDPVLWAQMDRFYGPMSKKILLMEWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHGGKCLFEHKKRSRA*
SAHD_10002991SAHD_1000299116F059692MDKETEQLILKKLQIDYLSLHAIKSDIEKIISALVVDLDPRVNEIQEIQDQIKGYLSEP*
SAHD_10002991SAHD_1000299118F099347MNLAEFIENFEAFITYIEEAWEQKDLEILKAIVSDCEDFINAYGHQFKCYSQTAKEWKESYKKNREKRKEIAKGICEWCGRKKGTNCHHLAKRGRLVLYNDVRLLRILCINCHRLFH*
SAHD_10002991SAHD_1000299136F051061MSFLDKLKEKAKQRERKSLYLPELDETVYWYPMTAGERQRILNAAGFKWARDAVQMDNSKYKASLIIEKLEDKDGKKIFSNTPEHKDLLINKIDDEILTRIVSAIDPSKTEEQQIEEAKNG*
SAHD_10002991SAHD_100029918F076577MFWPENKVISLMEIVFHFGAINYELNNGKKIREMWKEFKENCIDKRLKYINPDPRCTHPVNLDVLDHCWGYAEKIDKGEEIDMNELCEGCEFFREEVKNENPTQ*
SAHD_10002991SAHD_100029919F071725MKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLFAHDEEIKAIREKWERKEINKVGLFHELEKLSKVESLPG*
SAHD_10014773SAHD_100147732F061390MVIISKDEAERLDRLVARYGQRTVMEALEAKMMGSWSVTYFPDVDSWEVSDYGDQNFIIKDGGKCNCERGFGKNGSCIHQVLIELKKWDLEDELGVE*
SAHD_10015939SAHD_1001593910F061390MVVTNKEAERLDRLVTQYGQRTVMEALEAKMMGGWSVTYFPDVDSWEVSDYGDQSFVIKDGGKCNCGKGYGKNGSCVHQVLVELKKWDLEDELGVE*
SAHD_10025190SAHD_100251905F039153MKYTVSSSEKSKMYNTEVIFFNNSKQASRLNVSPLHKEIKQWAKSQGYTPKLYLRSVAIECNNPDLPKEYELLVVDLIQIIANGQAYLVAIDTLGPSENNLHFILEEHAKLRKAIYVTAECLDDVICEIQDNEHNHKGDPCVPDIKSRRSFQGDYSILFSPENLTWKTARYERA*
SAHD_10055135SAHD_100551355F069434MNRIFDKTTCWNIFDHTDSPDPLWDLQRQGKHREAQKAAIRLTLRHPLRMLPVIVNCLRCGRS*
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