Sample 3300001459

3300001459: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - All Sites - lt1k

Overview

Basic Information
IMG/M Taxon OID	3300001459 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0094242 \| Gp0057410 \| Ga0012510
Sample Name	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - All Sites - lt1k
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	198169809
Sequencing Scaffolds	35
Novel Protein Genes	40
Associated Families	38

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	22
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → unclassified Microbulbifer → Microbulbifer sp. OS29	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Greenvirus → unclassified Greenvirus → Cyanophage S-SSM6b	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium MED-G40	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal plume → hydrothermal fluid
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Mid Cayman Rise, Cayman Islands, UK
Coordinates	Lat. (^o)	18.35	Long. (^o)	-81.85	Alt. (m)	N/A	Depth (m)	2000 to 4000
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002030	Metagenome	601	Y
F004699	Metagenome / Metatranscriptome	427	Y
F005149	Metagenome / Metatranscriptome	410	Y
F005649	Metagenome / Metatranscriptome	394	Y
F006865	Metagenome / Metatranscriptome	363	Y
F009237	Metagenome / Metatranscriptome	321	Y
F010325	Metagenome / Metatranscriptome	305	Y
F012921	Metagenome / Metatranscriptome	276	Y
F013899	Metagenome / Metatranscriptome	267	Y
F015945	Metagenome / Metatranscriptome	251	Y
F016014	Metagenome / Metatranscriptome	250	Y
F017149	Metagenome / Metatranscriptome	242	Y
F019664	Metagenome / Metatranscriptome	228	Y
F021319	Metagenome	219	N
F023123	Metagenome	211	Y
F032684	Metagenome / Metatranscriptome	179	Y
F037257	Metagenome / Metatranscriptome	168	Y
F039182	Metagenome	164	Y
F041436	Metagenome	160	Y
F042560	Metagenome	158	Y
F042931	Metagenome	157	N
F045995	Metagenome	152	N
F050430	Metagenome / Metatranscriptome	145	N
F055781	Metagenome / Metatranscriptome	138	N
F058220	Metagenome / Metatranscriptome	135	N
F059066	Metagenome	134	Y
F061920	Metagenome / Metatranscriptome	131	Y
F063751	Metagenome	129	N
F063767	Metagenome	129	N
F064883	Metagenome	128	Y
F067832	Metagenome	125	Y
F076171	Metagenome	118	N
F077773	Metagenome / Metatranscriptome	117	Y
F078840	Metagenome	116	N
F084703	Metagenome / Metatranscriptome	112	Y
F093968	Metagenome	106	Y
F096028	Metagenome	105	Y
F099450	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
MCRcombined_1001166	Not Available	748	Open in IMG/M
MCRcombined_1002520	Not Available	924	Open in IMG/M
MCRcombined_1002732	Not Available	748	Open in IMG/M
MCRcombined_1010074	Not Available	659	Open in IMG/M
MCRcombined_1014687	Not Available	614	Open in IMG/M
MCRcombined_1018543	Not Available	510	Open in IMG/M
MCRcombined_1023254	All Organisms → cellular organisms → Archaea	516	Open in IMG/M
MCRcombined_1026145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → unclassified Microbulbifer → Microbulbifer sp. OS29	564	Open in IMG/M
MCRcombined_1047354	Not Available	745	Open in IMG/M
MCRcombined_1048914	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	512	Open in IMG/M
MCRcombined_1053992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
MCRcombined_1059884	Not Available	613	Open in IMG/M
MCRcombined_1072897	Not Available	957	Open in IMG/M
MCRcombined_1073144	Not Available	554	Open in IMG/M
MCRcombined_1074981	Not Available	850	Open in IMG/M
MCRcombined_1092049	Not Available	856	Open in IMG/M
MCRcombined_1092159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	974	Open in IMG/M
MCRcombined_1092544	Not Available	726	Open in IMG/M
MCRcombined_1094949	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Greenvirus → unclassified Greenvirus → Cyanophage S-SSM6b	564	Open in IMG/M
MCRcombined_1104160	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	870	Open in IMG/M
MCRcombined_1116268	Not Available	606	Open in IMG/M
MCRcombined_1136975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	828	Open in IMG/M
MCRcombined_1144757	Not Available	526	Open in IMG/M
MCRcombined_1150629	Not Available	866	Open in IMG/M
MCRcombined_1203974	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus	532	Open in IMG/M
MCRcombined_1211712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium MED-G40	673	Open in IMG/M
MCRcombined_1217360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus	579	Open in IMG/M
MCRcombined_1287748	Not Available	839	Open in IMG/M
MCRcombined_1320875	Not Available	522	Open in IMG/M
MCRcombined_1337000	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	526	Open in IMG/M
MCRcombined_1353537	Not Available	620	Open in IMG/M
MCRcombined_1375569	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	507	Open in IMG/M
MCRcombined_1383821	Not Available	576	Open in IMG/M
MCRcombined_1448363	Not Available	554	Open in IMG/M
MCRcombined_1526913	Not Available	672	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
MCRcombined_1001166	MCRcombined_10011663	F012921	MADEFDFGFSAVSTEEFSKTQTVTEVQPSTASSEEFDELKKKLDSISSLIQTLGDREDTSLFDETGEIVAANGEKISRVEDKIDKILAMESSQVASALEEQGSSIRA
MCRcombined_1002520	MCRcombined_10025201	F002030	MIEVLVFGMVVLSVICLWLLIEGRKSPKFLIWFIPLLLILVSSTYETYTSILGYPRTSTPQKGLYLKHFIDEPNWIYLWVLGDGNVPMSYQIIYSRETHNSLEGVSGKSEEGKFMVLGVDESEMDGNEEGEEGEDSGGGFTIGGDMSFYEWDFETNLPSKNVE*
MCRcombined_1002732	MCRcombined_10027321	F039182	MLIIVLAALSLNGCADTADAEDSTAITPVDNQESTDSSTDSSGETIWIAIVMTWNPVNRTIDKEFTTEVACWNYYENGVGEGKFGTQHLDHQDNPPTKDFHFGPDHLEYPIRTYR
MCRcombined_1004585	MCRcombined_10045852	F016014	MNSILESKEDAVVRYELKGGGCGGLIAKWDTELHYHPEEGEMTWPLEDGVFVVDESTAEFIDGGTVNYDLTNFMPNFVVVVPGKGQCGCGSSFVVPK*
MCRcombined_1010074	MCRcombined_10100742	F059066	MSINIKVKNITEEQYNHFFQKWLYTYGGATDVVSLEDYIKEYDSDLYGDIDTYSNKVCPCVMCLEENIDG*
MCRcombined_1014687	MCRcombined_10146871	F019664	VKDTDDDKQVDGSDAGAVPATSTNSRVMYQGIFDFAKILNAYYYTPDEWSRQGMWGPLPDDRNSLMGVKQHRRTDESL*
MCRcombined_1014970	MCRcombined_10149701	F067832	MQPFDKLNDRSYGNTGTPITMDMGGWNIFYMRDGIEQRCFLKEGTLLNTVAVFNSLERTSGFDTPLRIERLDIF
MCRcombined_1018543	MCRcombined_10185432	F064883	MDWIIDRFXXXXSSYAAAGAAVIGIGVIINQPMLIMLGIVGGAVGFVLKDKGVI*
MCRcombined_1023254	MCRcombined_10232541	F063751	SETLIKPTTPPEGSVSGGIPATPEPGSKEMGSASGYRQAQKGGESIFAGNKKLWGKWEDHRIGKKVAGREWKGGKLVDLLPKGVK*
MCRcombined_1026145	MCRcombined_10261452	F023123	MDRNYFKEKHTGKKSKGSHTICCGQDKDRHILNKNKKDEWEMIERHCEDHLTHYSSVKDITPICCKVCGRLLEYRCTLDRESYYNKNTIDTK*
MCRcombined_1030193	MCRcombined_10301931	F099450	MPKIRQQPRXXXXXXXXXDETWAAIVMTWNPVVRTIDKEFSSEVDCWNHYEGGTGESKFGTQHLDHQNNPPTKDFHFGPDHLEYPIRTYKGKDGQGQVWLTCDIKGRYEGL*
MCRcombined_1047354	MCRcombined_10473543	F042931	MNKEEFYISDWDMMMKIWSDCPVNGCKNKINLNLNTGKCFPHSEGSYQWKSFKILFKNTFINS
MCRcombined_1048914	MCRcombined_10489141	F006865	VGKISQIVNVNDTLYEVLGIMSVERSNDKGTDYWKERWGADNVLRNGNDYYYCRVIIN
MCRcombined_1053992	MCRcombined_10539921	F093968	MTYRDGLPRFSARSVRCCDTGHREACATLSERLGKP
MCRcombined_1059884	MCRcombined_10598842	F009237	VNKRLTKLKGLIDDGSVPTILEVRTNSREYSYEDVIALDYGFVQDLYMGNENFETWFTYIGPKPIKLNDLTINKNEMIEIILDYYEKL*
MCRcombined_1072897	MCRcombined_10728972	F005649	DRYRLVLFDNKVQRSLSKTRYKRLTNLNSDNSLEGLVIDWQFANTERMFDNFVEPVMDYQPTYAFA*
MCRcombined_1073144	MCRcombined_10731441	F041436	IIKDYIDGMEKIMKKYSKPLGALLTDYTKKRTLDPDSDSGEKAMWDELVVNNFKIQKIHVGPEYAEDFEGDDDIEGFPFELYDTPEDMVDYITRTVQRIKL*
MCRcombined_1074981	MCRcombined_10749811	F063767	CCKLLKDDNTGCSLGDDRPLFCKLYPLLENKSGRMVINNWAYLHCPKPQDYELDKVVDGKYHYKLKKKHKNKRDELILDDKIENVVKQ
MCRcombined_1074981	MCRcombined_10749812	F055781	GVAMGCKLYNKNVKTIYPVALSNYVYKNKKMWYDRLKDRSKFDGNFKVVQSDYPYQYKLKLDESLPLDQTYEAKAWDWMVKNLEPSEKVXXXXKAWDWMVKNLEPSEKVLFWDVGIKEYDLDYIEPIKWHKSEYEKTLDREVRRKTKVTKHDF
MCRcombined_1092049	MCRcombined_10920493	F005149	CKAVTYPGHYFYDHLEDVHMMPIKRERIIAVGIDKYGQEKGLAEEETNDECMERFKFTHPEYGTEICWCPNCIGGETLDKVSKVCKIHGQIYVKGKHGA*
MCRcombined_1092159	MCRcombined_10921592	F050430	MDKKLKENLIVGTKIVGMLFFLIILIATLVWPGGVDTLANLFLTKE*
MCRcombined_1092544	MCRcombined_10925442	F078840	VSPNPLIVKLDNIPTLIFLLDLVISILFESDTYSDNFLSKSIFGELLSSTINIV*
MCRcombined_1094949	MCRcombined_10949492	F009237	VNKRLTKLKGLIDDGTVPTILEIRTNSREYSYEDVIALDYGFIQDLYMGNEQFETWFTYIGPKPIKLNDLILNKNEMFEILLNYY
MCRcombined_1104160	MCRcombined_11041602	F013899	VKLKRXXXXAINNMFPDTSEIEEGEKGQFELFQSGVSFMKAGHGKFFDLEDVKKKLTESGQDLFTNR*
MCRcombined_1116268	MCRcombined_11162682	F010325	MLRKELVSDKLDQLQLAVDRLKSSLVVPTDPEDVVTPTEVIIQQLQQIENQIDQIVNLIELEEE*
MCRcombined_1136975	MCRcombined_11369751	F058220	MQIFVDCDDTLVLYDSHTGVHPYGVRHGEPWHPNQPLVDSLLETEHPVFVWSGGGAWYAEIVAGKLGLDFPCLDKDETAFELIQEGDVVIDDQDLGGRRTHNPFEWPETKGRLNPDQL*
MCRcombined_1144757	MCRcombined_11447571	F019664	VKDTDDDKQVDGSDEGAIPSTSTNLRGPYDGIFEFSEKQREYYYTQREWDRTIGYGKVPDERNTELRGVKQDRRTDETLF
MCRcombined_1144886	MCRcombined_11448862	F004699	MNGGIYTLRLKLSDFLNDPLEHLVVDKIHEIYKIQNFKLQLWYDEGELTPADLKSFIEKYESLLHYKTTIRPNRTRDFTQFTWYNIIHKDDKVIDFPLRFQYEHESGWRLGGVLDGLEQFRGCLKFVTSPKPPRDDRPPKRKQKRNDYED*
MCRcombined_1150629	MCRcombined_11506291	F017149	MFINGVETNESPTDFLGKIKEATNVPYYIGCANPYARFEDRGYFKGTIAQVTLWSSCINPEEASYLYNGGFPRNVTDKKNFDGWKQGSEKYKSASKVVGYWNFDNVVGDRVIDKSGNDNHAKIHGAIKKEKELRIGSVALIPNRRDGKYTCLEHEENGWSQTKFSHWETRE
MCRcombined_1203974	MCRcombined_12039741	F076171	YQSAKIDSSQFFRVINGFQKPGFGFFEKLAIAFPDLNLSWFLTGEGEMFTENLDYAEKTILENYRKLPDEGKIGFEVRTNLYEREYLEHKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENTEADIQKLISLDAEYIKEF
MCRcombined_1211712	MCRcombined_12117121	F042560	KLRKKGKFPIVSMVTKNNIKEFMKVAVMLVFHISSWQ*
MCRcombined_1217360	MCRcombined_12173601	F021319	PSATTISGTKISPPPTPKRLDIIPAKKLAPAEKTSKIRDVSKGFRSIFLFRKMYDADAKRTSANKILKISGDRSEDMNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG*
MCRcombined_1287748	MCRcombined_12877481	F045995	MWTNNIVTFYGADEDLKKVAERLYSPGETSEEDNCFDFNKIIPFPNELSYIHSSRFNSGKKMIHGREYEQWYYVNSDGKMIENNPDNYFEKSRLKGMSSRMEKQFMRKYGALNDTDWRAINWGTIWNSNSGPGEKYREKLVYNFRTNYGSARLIVLEIESMIYRGEFPKVKMMWEHDNVDVHLCFMEDDEYVPDPTPVFTVGFAETEKSTAEYYKW*
MCRcombined_1320875	MCRcombined_13208752	F015945	TPTEAEIAAHFSAMDDSVTLIHATIADDTDALKMMDAAEVKLMVTRNTDHLEIQSAKDWYSESSNSKTPYTEAVTAGKAYVAE*
MCRcombined_1337000	MCRcombined_13370002	F061920	RATCERRRHVNYLNKNGRRFLDKTHFANFIKPEKSDKSCHYEKQESIRDGLTKRLIAEEASRKNAS*
MCRcombined_1353537	MCRcombined_13535372	F037257	MKKFTIEVSHASAGQLQTIAAELKIMANSWEKFGPRILINKQAVQPPQLRMTPTETINKRARKRHKLAMFI*
MCRcombined_1375569	MCRcombined_13755692	F077773	MFXXXXXXXXXXXXXNEIYITKFKSKRKMFIKQQLGLELYSAVTPKLQPIPTCG*
MCRcombined_1383821	MCRcombined_13838211	F096028	DFRVDWASFELIDGDFHSHSFGEGVKRNDLMLEGN*
MCRcombined_1448363	MCRcombined_14483631	F084703	SHLRGMFSTAVPRFLPDKLEPLGLSLSGQLRVAS*
MCRcombined_1526913	MCRcombined_15269132	F032684	IQINEACPLNITKRTKKVMILLCMLRVLALIDKFKSNFSLFKAEEVMFLPFGIITKNTLKNIIQPKITPTDKKANRAPKIFVKPNDITAPIMSKTTGKMILLFINLDLQIRS*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001459: Hydrothermal vent plume microbial communities from the Mid Cayman Rise - All Sites - lt1k

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences