NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300001204

3300001204: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3



Overview

Basic Information
IMG/M Taxon OID3300001204 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0071004 | Gp0055342 | Ga0002912
Sample NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size8884293
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
All Organisms → cellular organisms → Bacteria5
Not Available4
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1
All Organisms → cellular organisms → Bacteria → Acidobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 58111

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From Multiple Locations In Canada And Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002592Metagenome / Metatranscriptome545Y
F016447Metagenome / Metatranscriptome247Y
F016944Metagenome / Metatranscriptome243Y
F026463Metagenome / Metatranscriptome197N
F026495Metagenome / Metatranscriptome197Y
F029291Metagenome / Metatranscriptome189N
F030179Metagenome / Metatranscriptome186Y
F030852Metagenome / Metatranscriptome184Y
F031191Metagenome / Metatranscriptome183Y
F037452Metagenome / Metatranscriptome168Y
F045330Metagenome / Metatranscriptome153N
F050579Metagenome / Metatranscriptome145Y
F067065Metagenome / Metatranscriptome126Y
F080175Metagenome / Metatranscriptome115N
F086219Metagenome / Metatranscriptome111N
F097856Metagenome / Metatranscriptome104Y
F099818Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12652J13314_100015All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2615Open in IMG/M
JGI12652J13314_100063All Organisms → cellular organisms → Bacteria1967Open in IMG/M
JGI12652J13314_100216All Organisms → cellular organisms → Bacteria1467Open in IMG/M
JGI12652J13314_100250Not Available1412Open in IMG/M
JGI12652J13314_100266All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1387Open in IMG/M
JGI12652J13314_100319All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1304Open in IMG/M
JGI12652J13314_100360All Organisms → cellular organisms → Bacteria1253Open in IMG/M
JGI12652J13314_100614All Organisms → cellular organisms → Bacteria → Acidobacteria950Open in IMG/M
JGI12652J13314_100798Not Available827Open in IMG/M
JGI12652J13314_100813All Organisms → cellular organisms → Bacteria818Open in IMG/M
JGI12652J13314_100888All Organisms → cellular organisms → Bacteria780Open in IMG/M
JGI12652J13314_100904All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria771Open in IMG/M
JGI12652J13314_101186Not Available652Open in IMG/M
JGI12652J13314_101233All Organisms → cellular organisms → Bacteria → Acidobacteria642Open in IMG/M
JGI12652J13314_101258All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina → Thiocapsa marina 5811637Open in IMG/M
JGI12652J13314_101598Not Available567Open in IMG/M
JGI12652J13314_102106All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12652J13314_100015JGI12652J13314_1000154F037452MESSFLIEVDNTSILRTGALHCYHYTLNRLPAPRLLLPRSGLERSDFVH
JGI12652J13314_100063JGI12652J13314_1000632F026495VFGVAAASRNTRFQAARYGLTWVGLAPTDRASFAWRLPSLDHRVGARKQGRRH
JGI12652J13314_100216JGI12652J13314_1002161F097856EKSALGHVWTAPWQELSDVLQQVGCGHVSGLLMRQVWPLALMLCADRVPIVRMHSKVR*
JGI12652J13314_100250JGI12652J13314_1002502F050579MFSGMEKQPDKTPIKSLRDAYKISGFRVQARVDSYDELEHPAFVVTLDRRSKKRCAAGAGKSAAAFTTNAGDGRAILAAAIGKSISIFPCAA*
JGI12652J13314_100266JGI12652J13314_1002661F002592MTENPEASVLTATRAAQHFRLFRANDAYEHLCILTLLPSLAPLHLMLADTPWPHGFGATLASVGPLSEGFERSVASPLQPRRLRAMGXTV*
JGI12652J13314_100319JGI12652J13314_1003191F016447NEAIAKRKSGQELSSYAPTDFELAESFGGSSEYLPFLRPPLWPFSFIRLFGQEEE*
JGI12652J13314_100360JGI12652J13314_1003601F030852ETIDKEEVWSAIRYLDPDEREKDKEVNTATIIATLALLIIVGGVWVLLWLRVRQP*
JGI12652J13314_100614JGI12652J13314_1006142F067065MAVHPVLPSDNLHSVGIPEYLLFAQQGIYFTAQYPTYTSPCQRFDAALASGSA*
JGI12652J13314_100798JGI12652J13314_1007981F026463SKANVKVEKQPNGQVRVVIEGLSIAGNMMDVEEGVLQYLNQAGTAIIKEALQQHDVEGDPLFCGLENGRVKGNSPRPTKHISGKRK*
JGI12652J13314_100813JGI12652J13314_1008132F080175VCGVAATAGEIGRLDGLGKGAGQDMGGDGTGSPAIGEEPARIAVVLGLPHPPQAFVHLFGHRHDPFLVALADDAQDATGLVDGGDGKSSGLADPQAAAVNQAETAAVYRIAHRGENAPHFGMGKRLRQPPLLGEPDLFLNSAQSWPSVFR*
JGI12652J13314_100888JGI12652J13314_1008881F030179MITAGVSRVASGLLCVHAIAITPAGPMELVRSSLSIVNGLPCVTVRSAPAIVVSGPAQRSLRLWPARSPSRLATLYIESSDSLVASAADSIASGWSEPVPGRELHPLKSSAFHGALLRQ
JGI12652J13314_100904JGI12652J13314_1009041F099818MPVERRGQAIAIWLGSTGAGSNRHQEEPDVQWKAAAFVRWHEPDDARVSSPDL*EAXGEIPRAYSA
JGI12652J13314_101186JGI12652J13314_1011861F029291MRKTKSAVRNGETRKEGVKSYPCGSAPVWKTLAEVLGLGQSGHSQCAAAMRRSDGASQRYSGGWRFGLIDARVPALTAKRNCRFLPAVPDGLMRLTRQAFRVLRVATWRKWPLSSTIELPPRRQPLAVVTLRYKAVPKSGRHARLSGTSHLRPAVWGTQLDQSSLLGPPAKEMKGRSAGSSACQPGFGVVSSLTQAAVGPERASSRSNPRQAKQHPF
JGI12652J13314_101233JGI12652J13314_1012332F045330LAHRLTAFGLRTFNEFGLGGRNSTVAGVGLSVDDFVSAVLVEYMEGRLQHRASRGDLFSLLATAMRNDIIDSLRKAAHAHEESRSPLPAQRDADAAPLSLDELPGSAIDSAASIDEERYGERARTAFAGEPELAEVVRAVLELNLYKPREIAAELGITAAEVQNRKKRLQRQLIDHNLVGRKTA*
JGI12652J13314_101258JGI12652J13314_1012581F086219MNRSAEDGAWSSPHYGDEGAWVPLRRTKVCAXDTVGKSVSDSGRPGIVRRQGMVGILRHSQTKGRATGNAKPSLKPANGRCGYKRKRNSDRCGARSRIGAR
JGI12652J13314_101598JGI12652J13314_1015982F016944MAQLKQIANAAQSTRADVGFPAGAHAATMTLVPVSPLGRDQRATAVGEAGQHEQNTAAADTADDGERAALKRMALAGDNYRIGKIPAMGSLSPLLSTGS
JGI12652J13314_102106JGI12652J13314_1021061F031191LWFYCEFRPVSVMGISSTTGKPVNRPLTCLSATGRISRKGNMLREFALAVLLSGSALAQTHAPLEPXLQQLEQLDEIRGRQCEVPEGFGCGILFDLDLPESGDMNLSVVGGVVHQISVILNGTMYTVVFDPPLRRDDKFSNLRRYVRIPARIDGDHLTIRWPDKTKA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.