NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000723

3300000723: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 72



Overview

Basic Information
IMG/M Taxon OID3300000723 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0075432 | Gp0054557 | Ga0001995
Sample NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 72
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size18003684
Sequencing Scaffolds19
Novel Protein Genes19
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
Not Available12
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameTropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)N/ADepth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003164Metagenome / Metatranscriptome504Y
F003565Metagenome / Metatranscriptome479Y
F005718Metagenome / Metatranscriptome392Y
F007624Metagenome / Metatranscriptome348N
F010450Metagenome / Metatranscriptome303Y
F010600Metagenome301Y
F012657Metagenome278Y
F019273Metagenome230Y
F022366Metagenome / Metatranscriptome214Y
F032469Metagenome / Metatranscriptome180Y
F045461Metagenome152N
F048473Metagenome148N
F063348Metagenome129N
F078037Metagenome116N
F083637Metagenome / Metatranscriptome112N
F084748Metagenome112Y
F101797Metagenome102Y
F104209Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12372J11909_100062All Organisms → cellular organisms → Bacteria → Proteobacteria2989Open in IMG/M
JGI12372J11909_100404All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1741Open in IMG/M
JGI12372J11909_100628All Organisms → cellular organisms → Bacteria → Proteobacteria1479Open in IMG/M
JGI12372J11909_101291Not Available1151Open in IMG/M
JGI12372J11909_101425All Organisms → cellular organisms → Bacteria1102Open in IMG/M
JGI12372J11909_102515Not Available867Open in IMG/M
JGI12372J11909_103636All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei735Open in IMG/M
JGI12372J11909_103648Not Available734Open in IMG/M
JGI12372J11909_103651Not Available734Open in IMG/M
JGI12372J11909_103915All Organisms → cellular organisms → Bacteria711Open in IMG/M
JGI12372J11909_104815Not Available646Open in IMG/M
JGI12372J11909_104850Not Available643Open in IMG/M
JGI12372J11909_105027Not Available633Open in IMG/M
JGI12372J11909_105146Not Available626Open in IMG/M
JGI12372J11909_105279Not Available619Open in IMG/M
JGI12372J11909_105421All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium611Open in IMG/M
JGI12372J11909_107534Not Available527Open in IMG/M
JGI12372J11909_108042Not Available511Open in IMG/M
JGI12372J11909_108403Not Available500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12372J11909_100062JGI12372J11909_1000623F083637MKKILVVICSVTLALGLAGCGWAGKTPIIGKGKAPAPVVTKG*TS*
JGI12372J11909_100404JGI12372J11909_1004042F007624EPMQLREGSFHGPRPTCPKHPKQRVHRHGFYVRFENCDSQRRLRIERFVCPRCGRTLSVLPKNRLPYVAVNTTILESDFDARASGTDPPSCSEKERGCLGRAFERFADRVAPLCALLGQMIRPIKPSVSECWRALRQLDNLEGILLLLGTKFNTSLLADYRCLQPGF*
JGI12372J11909_100628JGI12372J11909_1006282F010450MNSVPFSRDFVAAGASAYRPRGEPGLAQRGLLRRVVDAIALSHQRAVERDIARVLGLSYPGGRLTDEIERRLFEHLSGGRGFL*
JGI12372J11909_101291JGI12372J11909_1012912F078037MDAKVSAVILVTAFTASAAPAQGPSTEKLKADAQEVVKIISSDSAKAQAYCETIKLGDQMDQAEQNNDSDKAEGLSNKIDELNQKLGPEYLKLGQDLQDIDPNSPDGLELGRTLAALDKLCK*
JGI12372J11909_101425JGI12372J11909_1014252F104209AHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR*
JGI12372J11909_102515JGI12372J11909_1025151F012657RDDPQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG*
JGI12372J11909_103636JGI12372J11909_1036361F003565LAVRPEGANHQWRKNPPGELSIDPVADERLVRVTAWVGAS*
JGI12372J11909_103648JGI12372J11909_1036481F063348MTGFDQTVRLPDRQAVPSVNLKKAEIEDLAFRFRDEVKAEILQHRGSNAIGVVGSFVVNIEAHRARYAKKLEAIRAGADATTVFLADEVGREIDALATKEIKRVRDATVFLADEVGREIDALATKEIKRVRDAGRVEFEPGAADHQIPLEIHKIGLSDNQLEVIMRTAEPLAEEKCQEFLQRVAAILP
JGI12372J11909_103651JGI12372J11909_1036511F101797RRWFGAPGKCSTGLDIDTNLQNPNASGIGAWGTGEVDKSRNQKIFDQRRFAIRTTPVVQENNGNSRGCKSDTRVPRNANIRILVQSGVWSDVDIDEDGNADGRVRTADLTSNLATMPPWGPS*
JGI12372J11909_103915JGI12372J11909_1039152F010600MPPDLETYRQALLDLYLRLPDTPRRLSRYDLRLVHQLWERQVPFTVVEMAFLLASARRATRHPDAIPLGPIRSLHYFSPVIEELLQTPLWHSDTYLAHLRSKVTLRPVPSTPR*
JGI12372J11909_104815JGI12372J11909_1048151F019273NKKYPFKQMQPGETFKLNDEDVRSAQKMAWYYRTRCKRPIRIIIAKSDDGYHCHRID*
JGI12372J11909_104850JGI12372J11909_1048501F032469MRPFDRDLIRGEHYGQRSCEPHLKAEHMGAPTKTVT*
JGI12372J11909_105027JGI12372J11909_1050272F048473ICQCVQPKELALGNRITAALIFLNAVGFLGCLILIATVSHQVPDVAIWIVRAVKYSLQMFIFGALLPVIVWSIAASEINRSSFRVRLVEDWARYFLLFASGALFFIAASRLPNSIISSSEHESELTTRHEGGFWICPFLGRCWPPGTPGLGTWEK*
JGI12372J11909_105146JGI12372J11909_1051461F022366MDGGGLEIPRPGIAPGEQAVAFAAELIDRSGQAPVIEAALAHRTGRRRPLPVRAVLTALLCLALED
JGI12372J11909_105279JGI12372J11909_1052792F083637MKKVFTVICSVLVALSLAGCGWFVPGKGKAPIIGKGKAPA
JGI12372J11909_105421JGI12372J11909_1054211F084748MTQRADLPDLDTLNPGALKALIVAQHEQLLQKDDQLLSKDEQLASRDE
JGI12372J11909_107534JGI12372J11909_1075341F003164MSAWIFIIGLLLLWAGVSSRLARRERRSLELAALNYPIKVAAFWGRDAKGERQAYFDKFEEHKNWRNNIRFQLTNWTTFGIGAALCLVGTVLWLGEDSTRTWDRLWDLVGPFVIAVAGIYYVYQLMKRLDKAESEIRWLNLMLEQVKDNGQVNYSELERRIDGLE
JGI12372J11909_108042JGI12372J11909_1080422F005718MAKRKKRVATVNRKLGISINCRVQKPFLKDLDAYRKPLKLSRPAALVKLAXEHLAGLKEXAEKLWEGAVERMFPAASGVKGDDPR*
JGI12372J11909_108403JGI12372J11909_1084031F045461MLFGAVFIIMFVAAVIIDLAALLRFSGLANGLPANILEMAGVLTGLTIFPLLVMGMSVSVDLNHK*
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