| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000676 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0075432 | Gp0054834 | Ga0001950 |
| Sample Name | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 27 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 5585350 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 9 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → tropical forest → forest soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Luquillo Experimental Forest Soil, Puerto Rico | |||||||
| Coordinates | Lat. (o) | 18.0 | Long. (o) | -65.0 | Alt. (m) | N/A | Depth (m) | .1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016190 | Metagenome / Metatranscriptome | 249 | Y |
| F019273 | Metagenome | 230 | Y |
| F031318 | Metagenome | 182 | Y |
| F045461 | Metagenome | 152 | N |
| F064047 | Metagenome / Metatranscriptome | 129 | Y |
| F072153 | Metagenome / Metatranscriptome | 121 | N |
| F083637 | Metagenome / Metatranscriptome | 112 | N |
| F091102 | Metagenome | 107 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI12333J11928_100466 | Not Available | 996 | Open in IMG/M |
| JGI12333J11928_100476 | All Organisms → cellular organisms → Bacteria | 982 | Open in IMG/M |
| JGI12333J11928_100609 | Not Available | 865 | Open in IMG/M |
| JGI12333J11928_100720 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis | 811 | Open in IMG/M |
| JGI12333J11928_101333 | Not Available | 614 | Open in IMG/M |
| JGI12333J11928_101455 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium | 593 | Open in IMG/M |
| JGI12333J11928_102005 | Not Available | 522 | Open in IMG/M |
| JGI12333J11928_102045 | Not Available | 517 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI12333J11928_100466 | JGI12333J11928_1004661 | F072153 | GQDVWVQELAEEVDIRTGRERIAMHGKAQRKHSVLTFPPHHQGIPLGARRAEGKILIHLRQSAPEVEKRSLAAYERVANRGGR* |
| JGI12333J11928_100476 | JGI12333J11928_1004762 | F045461 | VRQPTAPHSEFSLRSMLFGAVFIIMFVAAVIIDLAALLQFSGLVNGLPANILEMAGVLTGLTIFPLLVMGMSVSVDLNHK* |
| JGI12333J11928_100609 | JGI12333J11928_1006091 | F031318 | GHRNPRNGGDQMRTTTIATVAVVVLALLIVAKSRTVGLTEATGNPQQNTVSIYDLSVGHPNMKNLTVQQPPWP* |
| JGI12333J11928_100720 | JGI12333J11928_1007201 | F083637 | LMKKILVVICSVTLALGLAGCGWAGKTPIIGKGKAPAPVVTKG* |
| JGI12333J11928_100885 | JGI12333J11928_1008851 | F064047 | MTLMKSPRAGRLALAFGVVLSVFLSVAAFDASYAQPAPGAAPAAPAA |
| JGI12333J11928_101333 | JGI12333J11928_1013332 | F019273 | MIYRVRTNKKYPFKQMQPGETFKLNDEDVRSAQKMAWYYRTRCKRPIRIIIAKSDDGFHCHRID* |
| JGI12333J11928_101455 | JGI12333J11928_1014551 | F091102 | IQPGRFTVVSTEIDNPKVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVXDIEVAHVSGSKFXRWFYPYXLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCTRGLYGTMHDENDPTSALLIVVPEGSYLFDYYVAVCRAVTHEEPYLPQKH* |
| JGI12333J11928_102005 | JGI12333J11928_1020052 | F083637 | LXXXRGVLMKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTKG* |
| JGI12333J11928_102045 | JGI12333J11928_1020451 | F016190 | GQKSVYISTTEGKVIAHSNASVVFPGSTAGDNTLRFRVISELPGVEGTLAESVLKRLSEPVGTRSSNVWEAEADGRHYFVAVGQVSNIDWPWQVVVTVPRTGLLQAASKSTVILIGAMGLAALIALAIGYATSRTIGAPMTRLLSNAQLARHGNIELMEDVNTGLREIDET |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |