| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000493 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0074126 | Gp0054485 | Ga0011522 |
| Sample Name | Lentic microbial communities from White Lake grasslands, BC, Canada |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Pennsylvania State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 15666388 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis → Candidatus Nitrososphaera evergladensis SR1 | 1 |
| Not Available | 4 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Lentic Microbial Communities From White Lake Grasslands, Bc, Canada |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Microbial Communities From White Lake Grasslands, Bc, Canada |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | White Lake grasslands, BC, Canada | |||||||
| Coordinates | Lat. (o) | 49.2833 | Long. (o) | -119.5833 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014681 | Metagenome / Metatranscriptome | 261 | Y |
| F025994 | Metagenome / Metatranscriptome | 199 | Y |
| F077227 | Metagenome | 117 | Y |
| F081499 | Metagenome / Metatranscriptome | 114 | Y |
| F081868 | Metagenome | 114 | Y |
| F091572 | Metagenome | 107 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| MLSed_100713 | All Organisms → cellular organisms → Bacteria | 2992 | Open in IMG/M |
| MLSed_101071 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis → Candidatus Nitrososphaera evergladensis SR1 | 4294 | Open in IMG/M |
| MLSed_101544 | Not Available | 2067 | Open in IMG/M |
| MLSed_104846 | Not Available | 741 | Open in IMG/M |
| MLSed_104931 | Not Available | 729 | Open in IMG/M |
| MLSed_106020 | Not Available | 620 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| MLSed_100713 | MLSed_1007135 | F077227 | METITQVRQQLDNLLARIETDQQALAAEQAAVARATEALHETPALQAAIAQGQQIMRGRVLMLIDHQLGLIRESLTAVLLRALRRQVGELEL* |
| MLSed_101071 | MLSed_10107113 | F014681 | MRSFLKDIRGVVDLGLVLMIGIAFAGLAVIAYIIYTLVDMLDATGSAAQTMGNITSGFDNAIALILVAITIFILSIAISALLMLRGR* |
| MLSed_101544 | MLSed_1015445 | F081868 | MESKNKQKQPVVNANSHGVSVAIWNNTNTQGKEYQSLSMNASSKQTDGSYKNRTIFFPSDLENLINALTELK* |
| MLSed_104846 | MLSed_1048461 | F091572 | MLPSDRYLADILGLTEEQYRHFQIEVRKRAAEGPQPAVVAGTETLIAAGISLLIGVGTTIISSLLKPTLPQPGQAPGQPRQTQDITDPIIRNSRFAPRYGFDSQQDIATLGSIIPIVYANRELISGDYYGGIRINMPMLWNQILSLGGGQMLRGVFLLGEGTVSSIDTTGFAIGSNTLQGYVFDNTSATEQGSRVTVYFSPDGGRIAGTDRVLGRTNANDDGSSSSSDVFQVYWDGDEQQDFCSSNR |
| MLSed_104931 | MLSed_1049312 | F025994 | MTDEDITKLVNDAIRHHELRVALWSGLLGAALMTGTWHAIWLCRNLTLSLR* |
| MLSed_106020 | MLSed_1060201 | F081499 | VKAFSLENAYAVEKAQVVRNTEGSNESVVIGEMVDT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |