| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000491 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0074126 | Gp0054485 | Ga0011520 |
| Sample Name | Lentic microbial communities from White Lake grasslands, BC, Canada |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Pennsylvania State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 13912511 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Lentic Microbial Communities From White Lake Grasslands, Bc, Canada |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Microbial Communities From White Lake Grasslands, Bc, Canada |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | White Lake grasslands, BC, Canada | |||||||
| Coordinates | Lat. (o) | 49.2833 | Long. (o) | -119.5833 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014811 | Metagenome | 260 | Y |
| F081499 | Metagenome / Metatranscriptome | 114 | Y |
| F083696 | Metagenome | 112 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| ML8_100867 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 2940 | Open in IMG/M |
| ML8_101095 | All Organisms → cellular organisms → Bacteria | 1048 | Open in IMG/M |
| ML8_104477 | Not Available | 911 | Open in IMG/M |
| ML8_104531 | Not Available | 906 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| ML8_100867 | ML8_1008675 | F081499 | VKAFSLENAYVVEKAQVVRNTEGSNESVVIGEMVDTPPGP* |
| ML8_101095 | ML8_1010952 | F083696 | LLGHGYFFAYALKYNLSLVVISKLGNIDKAYDSKAKLLLPNFERTWQGALFEGHNKKDTHALP* |
| ML8_104477 | ML8_1044772 | F014811 | MWIYDYKTKREYFASSPRTKFYNYKSIIIEPIPGKPCTILIRKEMQEGRKPAQVLEQLDMFLYLASSQDLQF* |
| ML8_104531 | ML8_1045312 | F014811 | MWIYDYRTKREYFASSPRYKFYNYISKVVEPLPGKPCTILIRKEMEEGRKPARVFEQLDIFKNLSTSSTT* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |