NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000393

3300000393: GB background transcript assembly



Overview

Basic Information
IMG/M Taxon OID3300000393 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045864 | Gp0054088 | Ga0011253
Sample NameGB background transcript assembly
Sequencing StatusPermanent Draft
Sequencing CenterPennsylvania State University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24882164
Sequencing Scaffolds26
Novel Protein Genes27
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon8
All Organisms → cellular organisms → Archaea4
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei1
All Organisms → cellular organisms → Bacteria2
Not Available8
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → unclassified Candidatus Scalindua → Candidatus Scalindua sp.1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Hydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationGuaymas Basin, Gulf of California
CoordinatesLat. (o)27.506Long. (o)-111.347Alt. (m)N/ADepth (m)1990
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008412Metagenome / Metatranscriptome333Y
F009657Metagenome / Metatranscriptome315Y
F015722Metagenome / Metatranscriptome252Y
F015852Metagenome / Metatranscriptome251Y
F024682Metagenome / Metatranscriptome205Y
F025653Metagenome / Metatranscriptome200Y
F028081Metagenome / Metatranscriptome192Y
F041592Metagenome / Metatranscriptome159Y
F049073Metagenome / Metatranscriptome147Y
F053662Metagenome / Metatranscriptome141Y
F058721Metagenome / Metatranscriptome134Y
F059606Metagenome / Metatranscriptome133Y
F060593Metagenome / Metatranscriptome132Y
F061500Metagenome / Metatranscriptome131Y
F064398Metagenome / Metatranscriptome128Y
F082079Metagenome / Metatranscriptome113Y
F082876Metagenome / Metatranscriptome113Y
F088271Metagenome / Metatranscriptome109Y
F091379Metagenome / Metatranscriptome107Y
F093179Metagenome / Metatranscriptome106Y
F094956Metagenome / Metatranscriptome105Y
F102444Metagenome / Metatranscriptome101Y
F102446Metagenome / Metatranscriptome101Y
F106177Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
WOR_100769All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1857Open in IMG/M
WOR_101178All Organisms → cellular organisms → Archaea1621Open in IMG/M
WOR_101254All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei1595Open in IMG/M
WOR_101545All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1507Open in IMG/M
WOR_101815All Organisms → cellular organisms → Bacteria1399Open in IMG/M
WOR_102120All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1352Open in IMG/M
WOR_102559All Organisms → cellular organisms → Archaea1267Open in IMG/M
WOR_103091All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1198Open in IMG/M
WOR_103329All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1149Open in IMG/M
WOR_104355Not Available1068Open in IMG/M
WOR_104424Not Available1049Open in IMG/M
WOR_109653All Organisms → cellular organisms → Bacteria812Open in IMG/M
WOR_110179All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon796Open in IMG/M
WOR_110838All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon776Open in IMG/M
WOR_111457All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon751Open in IMG/M
WOR_113889Not Available704Open in IMG/M
WOR_116090All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon648Open in IMG/M
WOR_117852Not Available607Open in IMG/M
WOR_117991Not Available606Open in IMG/M
WOR_119394All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → unclassified Candidatus Scalindua → Candidatus Scalindua sp.573Open in IMG/M
WOR_119497Not Available571Open in IMG/M
WOR_120174Not Available560Open in IMG/M
WOR_120635All Organisms → cellular organisms → Archaea548Open in IMG/M
WOR_122469Not Available526Open in IMG/M
WOR_122568All Organisms → cellular organisms → Archaea526Open in IMG/M
WOR_122669All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.524Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
WOR_100769WOR_1007692F091379VNFKLHRDVVKILDRLVESGLYKTRVDVVLAALRIYEPFQELWKKEVGDAAERPIGKI*
WOR_101178WOR_1011784F058721MLRATLPCADPQCKDEMRLVFQNERFLGYRCLLKPNTHNFRYNIERKRWEKIIIKTKPIIGYKESPYEILLEEEITIETI*
WOR_101254WOR_1012543F102446MRKKYVAQSLIKRLGETTSRRLDLKKTLILGVVLKGLPVAYSLARMNSVVENFVPTVAHRPLYMQHHVESYFPSLAWTAYFRDRLNRCETLLIVDDVVNTGFTKQKLESIVYSLTKEIETHRQFAALILNRKNLANQSFVGSNDLFALQVDATEVECDWGLITVPLWDLPVKEALIQCEEYFQRFWLSEKRFINIAY*
WOR_101545WOR_1015454F093179MKKALLYVATAILLGTVTMVAPLMLLKPRYFEAITRGSPASLETLDKGEGTYGDVGALERAISPPNLSSAGLIFIPGFLLA
WOR_101815WOR_1018152F053662LPITRKEFDNSTDTLSAKVVRFLESNPDDAFELEELAEAVGSRQLEVWAILDDLKRRKQVSGKCIKGTGYYCLAK*
WOR_102120WOR_1021202F059606MKSEHAFALVALILGIVGGVLLCKGAIDLVMKLFEGSRHISIESPLLIVVGVVAIVASAMLWTGRYLAGGVANIILGIVSVFYGRDAEGLMILISGVLGIVAPKIKD*
WOR_102559WOR_1025593F041592MGRQERCPQCGSKKIVIADDLKKCKVCRYEWTGKPRGKTSKKDKVRF*
WOR_103091WOR_1030912F061500MVEDPEQILETIKKRELDIEILQLQLKHNLTKKRAESKLVIMYYKACNAISRTKLMMHGINGHEIKAPQPPNPVDPWNDHHQKRF*
WOR_103329WOR_1033292F059606LCKGAIDLASKLFEGSRHISIESPLLIVIGVVAIIASAMLWTGRYLAGGVTNIILGIITVFYGKDAEGLMILISGVLGIVAPKIKD*
WOR_104355WOR_1043551F008412MEKILLYIRTRKQGSYIASIPLKKLAKLSKFPRKRWDFKDGWLILKAR*
WOR_104424WOR_1044242F094956MPAGDILMSPSVAPLAVRQREPSTITPEVTGLAAKCIPRYVLSVAKNVKCPSSLERAGQYIVVNATTRLNQAVGNNLIQLD*
WOR_109653WOR_1096533F106177MDNALKKLEEKILDEYLNLVQRVQPELERRFFYDVMPSWEDFREYRLEELANKNK*
WOR_110179WOR_1101791F028081KTRKENEEAYIKAKAFLEGFRARGQLSQKDNEFLFLMEFVIKGFKNHGNDIIKAFENQVRFNEAFNNLVAKVNDLEQEIRQIRITLDKMYKDR*
WOR_110838WOR_1108382F088271MERAEIKRIADYLKDLEEGLYVWDYRGITTQGHLTELYGIIERLMQATFETKDQELKPLLATLEYKARKCKQCIEARTGVRN*
WOR_111457WOR_1114572F064398KKLCVMALCAFLLTLAFSGVGNAVPEETQSVYYLEYGGLKIDIRAPDQAYPGENITVTVKTEAVVPQIYVKYINVDLYGVVNATTEVYLDQITHLKNSSLSSHEVQYNITIPDNICPGLTYGIINCEWELMGAPQKIPSSGFALTYIKNVELEQLQAEYDELNATYQTLLQDYTELESDVNEEVDSTRNLMYVFIATTAVASITVVVLLMRKPKKVWV*
WOR_113889WOR_1138893F025653MSDPIKYFETKLKAMSLGELQAYKKRLDESIKQKISKTAPNEQIAPLILYRGILEHEIKTRTTS*
WOR_116090WOR_1160902F093179MKKALLYVATAILLGTVTMVAPLMLLKPRYFEAITRGSPASLETLDKGEGTYGDVGALERAISPPNLSSAGLIFIPGFLLALGVSLYLKKRMYS*
WOR_117852WOR_1178522F024682LNAEDELISKLKTEISQALPPMFAGMAENMLESNKEVIINWLKENKDLVKEVIES*
WOR_117991WOR_1179912F082876KSAGYGVSLITSKVLDARRRGATTEAYGAIRRKEERSKATPQMMP*
WOR_119394WOR_1193941F049073LNRELIKRHEKILDKLDKDELPSQEDLQLVRDANEIHLNDEDNLNGRHKEAVELDKWLDTMMELTAKQAFEILEKHLHDDSHTPAVVFRALHTLWEEITPNDVVDGPGINDKGKCLKCGSKVSFADVTDTLVFVGDEIIKRHDGDITNRNCVRCTYPKQYPEYEGYDTR*
WOR_119497WOR_1194971F082079MNMQTRVVHAILSGIIIASVLGLALIPATWKAITEEPTFGPAISNMTIIEITASVAIIAITLLSFKLVRRE
WOR_120174WOR_1201741F102444LIILAVVTVLFIPVFIWSTGLTAETKSFWEISGLIATERIVVEEVNLRANVTSCTIYVRNIGKTAIIVDNVFISSPDGSLYKFEESQFSTDFDSVVQGDLMTVGIPDLGFIPTGGETYTVKVFTTRGVGDTYQVVA*
WOR_120451WOR_1204511F015852KGCNSEPITKVVEKPIPQIQYVDRWKVDTVRFVRRELITRYDTIYSEKIVTRLDTLLLIDTVSIVQTWLTEVANYDTTISDVRVKWSNYQNRTENLTVQYKRKEQKFSFGVHGLVGVQSDFIQNTKPMFGMGLHGYNKKNIP*
WOR_120635WOR_1206352F008412MVKLRLFVRSRKQGSRIESVPLKQLIKLSGFRKRRWTFKDGWLILEAS*
WOR_122469WOR_1224692F060593MAEYQKLSEAEYNKLKFQLRGQYIAILNVFNCYGLNHDVEQAVEECVKVAENFGMAVRGKGNSIHILDKPKRRAIG*
WOR_122568WOR_1225681F009657VIRMKEYEILYDTGEARKLVAEINRMAKEGWQAKSIGAFGAHTGIRSVYVLMEREVS*
WOR_122669WOR_1226691F015722LNIIQDANLAYYEVHLSTSASYSIVFQDTVIHRFTIDNGCSKYTRVQLLFLNRHGGWDAFNFDQRSEERLSNIERSQYNRPRGNWDTVTGLRDFTYDGWERGVTTTTVKAERQITVASDYVEEGYSDMLRDIATSRSVYIVDGTNLIPVVVTDSEFLFKTSVNEKLISYSFTLQ
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