| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000204 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0053620 | Ga0025998 |
| Sample Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 150m |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 43319669 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium EB0_41B09 | 1 |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal inlet → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Saanich Inlet 36, Vancouver Island, BC, Canada | |||||||
| Coordinates | Lat. (o) | 48.5663346 | Long. (o) | -123.5193257 | Alt. (m) | N/A | Depth (m) | 150 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002125 | Metagenome / Metatranscriptome | 591 | Y |
| F011294 | Metagenome / Metatranscriptome | 292 | Y |
| F024324 | Metagenome / Metatranscriptome | 206 | N |
| F028007 | Metagenome / Metatranscriptome | 193 | N |
| F035724 | Metagenome | 171 | Y |
| F046847 | Metagenome / Metatranscriptome | 150 | N |
| F059474 | Metagenome / Metatranscriptome | 134 | Y |
| F063398 | Metagenome / Metatranscriptome | 129 | N |
| F070021 | Metagenome / Metatranscriptome | 123 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| SI36aug09_150mDRAFT_c1004787 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1096 | Open in IMG/M |
| SI36aug09_150mDRAFT_c1005793 | All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium EB0_41B09 | 977 | Open in IMG/M |
| SI36aug09_150mDRAFT_c1005857 | Not Available | 971 | Open in IMG/M |
| SI36aug09_150mDRAFT_c1006119 | Not Available | 947 | Open in IMG/M |
| SI36aug09_150mDRAFT_c1008708 | All Organisms → cellular organisms → Bacteria | 777 | Open in IMG/M |
| SI36aug09_150mDRAFT_c1009643 | Not Available | 738 | Open in IMG/M |
| SI36aug09_150mDRAFT_c1009823 | Not Available | 730 | Open in IMG/M |
| SI36aug09_150mDRAFT_c1016821 | Not Available | 550 | Open in IMG/M |
| SI36aug09_150mDRAFT_c1018588 | Not Available | 521 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| SI36aug09_150mDRAFT_c1004787 | SI36aug09_150mDRAFT_10047872 | F063398 | LKINKTTKNEVKLVVKKEIFEIVFFGHWTKDSSNPGIEPLLNNLVDYPKIKKLTFSTKDLGDWDSFLMTQLVLIINFAKKKKITIVTQS |
| SI36aug09_150mDRAFT_c1005793 | SI36aug09_150mDRAFT_10057933 | F011294 | PSQMMDKAIANLPAYSNVKKCSSDSVTDAIVIIKPILSYQPQSTILYGDLKVKIYQSKSNRETHPDNFIREMNISHWKVLRFDKVTMDHYVNEVYTKLLEQLILKIDALQINKNYPTNGSLCDLLSTLRKSKINLRH* |
| SI36aug09_150mDRAFT_c1005857 | SI36aug09_150mDRAFT_10058573 | F070021 | MTIIKWISVLSLWALIGLVVHNQFXPNTVFGSVMGSAFIFIWFGVLIIGIFIRQKLKNK* |
| SI36aug09_150mDRAFT_c1006119 | SI36aug09_150mDRAFT_10061193 | F046847 | MPDVDKTVEVETPKTENEVVLSQSKLDKLIDKGFSKGANRAKTELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELIQTLNSTIEGLESNNKNMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFI |
| SI36aug09_150mDRAFT_c1008708 | SI36aug09_150mDRAFT_10087081 | F028007 | MEEWLIEQWKNGLMGKQAGSSNKKILLIVVVAVVVVIAYLYLSK* |
| SI36aug09_150mDRAFT_c1009643 | SI36aug09_150mDRAFT_10096432 | F024324 | GNCDLDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL* |
| SI36aug09_150mDRAFT_c1009823 | SI36aug09_150mDRAFT_10098232 | F035724 | MRFDYPTVVSATTSLVFNNNPESPYEREVIKHNSSVQMEDGSMFIYSRSVTNYRYSISVVLTSESERDALESFYDSTVNGAEKTFEYTDPYGDVYTVRFDESMRISEIFKDRLYRATFTLLQTA* |
| SI36aug09_150mDRAFT_c1016821 | SI36aug09_150mDRAFT_10168211 | F002125 | LNFQTYLLRTAVIALVGEPSLTSVDLFVSKDTAKLMFLRKRQQPIIEVQKVNK* |
| SI36aug09_150mDRAFT_c1018588 | SI36aug09_150mDRAFT_10185882 | F059474 | MAFKAIDRSETLEVVSTDDPAIDLKKSDVDAYKDSHDMKHLSFIDGEQPTVFHLGTITFMKFAEIKDKHISFDLSDNGQEIKTNLFGLTADSLRYSLKKADNLPFPIKVERGRLSDTTMDKLARLGI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |