NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000094

3300000094: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Tule



Overview

Basic Information
IMG/M Taxon OID3300000094 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063443 | Gp0053966 | Ga0026102
Sample NameWetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Tule
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size129333279
Sequencing Scaffolds30
Novel Protein Genes31
Associated Families29

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria8
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium2
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales1
Not Available4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → unclassified Syntrophobacterales → Syntrophobacterales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin2311
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum → Desulfatibacillum alkenivorans1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWetland Microbial Communities From Twitchell Island In The Sacramento Delta
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → saline wetland → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationTwitchell Island in the Sacramento/San Joaquin Delta, CA
CoordinatesLat. (o)38.107057Long. (o)-121.647578Alt. (m)N/ADepth (m)0 to .12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007558Metagenome / Metatranscriptome349Y
F019578Metagenome229Y
F019677Metagenome / Metatranscriptome228Y
F031503Metagenome / Metatranscriptome182Y
F031716Metagenome182Y
F040940Metagenome161Y
F047753Metagenome / Metatranscriptome149N
F049734Metagenome146Y
F054975Metagenome / Metatranscriptome139N
F056185Metagenome138Y
F056714Metagenome137Y
F057771Metagenome136Y
F057781Metagenome / Metatranscriptome136Y
F060102Metagenome / Metatranscriptome133Y
F060457Metagenome / Metatranscriptome133Y
F060458Metagenome / Metatranscriptome133Y
F062885Metagenome130Y
F063812Metagenome129N
F068995Metagenome124Y
F069004Metagenome / Metatranscriptome124N
F072484Metagenome121Y
F085853Metagenome / Metatranscriptome111Y
F087857Metagenome / Metatranscriptome110N
F092937Metagenome / Metatranscriptome107N
F096267Metagenome / Metatranscriptome105Y
F098776Metagenome / Metatranscriptome103Y
F100426Metagenome102Y
F102133Metagenome102Y
F103514Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
WSSedA1TDRAFT_c000119All Organisms → cellular organisms → Bacteria11372Open in IMG/M
WSSedA1TDRAFT_c003026All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2793Open in IMG/M
WSSedA1TDRAFT_c004912All Organisms → cellular organisms → Bacteria → Proteobacteria2112Open in IMG/M
WSSedA1TDRAFT_c006389All Organisms → cellular organisms → Bacteria1802Open in IMG/M
WSSedA1TDRAFT_c006484All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1784Open in IMG/M
WSSedA1TDRAFT_c012213All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium1161Open in IMG/M
WSSedA1TDRAFT_c012870All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1118Open in IMG/M
WSSedA1TDRAFT_c013542All Organisms → cellular organisms → Archaea → Euryarchaeota1074Open in IMG/M
WSSedA1TDRAFT_c014016All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales1049Open in IMG/M
WSSedA1TDRAFT_c014336Not Available1033Open in IMG/M
WSSedA1TDRAFT_c018605All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → unclassified Syntrophobacterales → Syntrophobacterales bacterium864Open in IMG/M
WSSedA1TDRAFT_c020625All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231808Open in IMG/M
WSSedA1TDRAFT_c023764Not Available737Open in IMG/M
WSSedA1TDRAFT_c024037All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria732Open in IMG/M
WSSedA1TDRAFT_c024779All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium719Open in IMG/M
WSSedA1TDRAFT_c025747All Organisms → cellular organisms → Bacteria702Open in IMG/M
WSSedA1TDRAFT_c026067All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium697Open in IMG/M
WSSedA1TDRAFT_c027250All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium680Open in IMG/M
WSSedA1TDRAFT_c030562All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria637Open in IMG/M
WSSedA1TDRAFT_c032976Not Available610Open in IMG/M
WSSedA1TDRAFT_c035211All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium589Open in IMG/M
WSSedA1TDRAFT_c035371All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont587Open in IMG/M
WSSedA1TDRAFT_c036916Not Available574Open in IMG/M
WSSedA1TDRAFT_c039044All Organisms → cellular organisms → Bacteria558Open in IMG/M
WSSedA1TDRAFT_c042394All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria535Open in IMG/M
WSSedA1TDRAFT_c042600All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria534Open in IMG/M
WSSedA1TDRAFT_c044021All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae525Open in IMG/M
WSSedA1TDRAFT_c045750All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria516Open in IMG/M
WSSedA1TDRAFT_c047715All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium505Open in IMG/M
WSSedA1TDRAFT_c047922All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum → Desulfatibacillum alkenivorans504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
WSSedA1TDRAFT_c000119WSSedA1TDRAFT_00011910F040940MGTLNNIFSLVFGINLIVVGLVAFIVGIVSLLKRDDSVKKLISIAYIIAGIAAVYFGVVLSRSAYXM*
WSSedA1TDRAFT_c003026WSSedA1TDRAFT_0030264F092937LLFLLVLMLGCVYTEPYRVAVTVEPMVRNCTCLGYISEISDMGAPQINPKFTYDAQERVLRKADMMNATHLVWIGDYPFAATAMIYRCSN*
WSSedA1TDRAFT_c004912WSSedA1TDRAFT_0049122F072484MRNTLNNRKGWLVFLVTLFGLMWSTSLHAANFLFFWSASTDPSATGYGIYQRTGGSSYVKIDEVSVQDLDNPATPSYLVTGLTDGNTYWFAATSISAFGTESDLSNQTCITVNGQIVECTDNDDNGTTVFISCFISAAGL*
WSSedA1TDRAFT_c006389WSSedA1TDRAFT_0063893F096267LKNKHHAVSQGARRFGKRSPPAADEHLQKPCNAGSRREALFFNNLFMHSFT*
WSSedA1TDRAFT_c006484WSSedA1TDRAFT_0064843F007558MQAIADLKALLLEILESAFQNGDVHATQQMGVNMSNAVKREGVVIIQNQNVEVLARIMPSMVKTLKLCDAMESSWRSQAAIELETQQKQLPPPVDDDDTDPIEACCSWLYENHINWQNMQDLMRARYLEY
WSSedA1TDRAFT_c012213WSSedA1TDRAFT_0122131F019677MITYSTLEASRILGIEKSRVRNWIVKGYIIPSWHKAMARGDKHLLTYDNLCYIYLFQQFRSKGLHRTAIAFIISEIEKTGLSKNLESGFRYVIWNTKNPKEGGIVAISSEIPTAIIDALIVDDRRAAPRGSSQMLVIDLLEVKNEVDRKREKRGG*
WSSedA1TDRAFT_c012870WSSedA1TDRAFT_0128701F047753MMKKIIRILEGLKVDDTWLRVAPFALAGCRKESYGKLTRLCRRKETLMAVVVAGVIGLYSAKKHVELCKKAVKAGRNASGDSDRELNKYLDAIWRVYLLDTSIDKQRLIEKAIGYVSGKLDQELSHSLTEAKKEYRAIIQQIMGAVQAGTGHSENAVHGYLSAFLNSI
WSSedA1TDRAFT_c013542WSSedA1TDRAFT_0135422F054975LTKQLFSIFDNKKKFFLISEDELKKFQHYVFDGLSVFDHPDARNLFHDVGSRQAQNDVRSWQLVCKYCPMNLRCEVLIEDTSKCAIFNKLTIRNYTLHAMEEIQFQRQRLHEILAGLKNGGTCDNHCELCILCDNVGHCVAEEAMRLLRESKIEDPSGTVCVA*
WSSedA1TDRAFT_c014016WSSedA1TDRAFT_0140161F063812PILMLISDYFVSLTMSTKHHDSKKHDDAKPAPDCHFCKEKYVYPEHPTPSGICHKCQTKIGVIILIIFVITGGIVFFGLI*
WSSedA1TDRAFT_c014336WSSedA1TDRAFT_0143362F031503MDMNEIKELFKATAAISTPEGIAAYKEFAAALTTPILQAIEQQSIMRQLFAVERLGPGAQASYPVAEDFEIPVWVLPGLGYVAQNFIEGIGEEVYVPTFSIDASGDWKLTYARDSRVDIAARAAEKAAKGIADYEEECGWRIILPAATSRFFGKGLLGARPAPIYEVDPASTGAGYLSKELINKMIVGFKRIGRTLTDLYISPEDAADIREWTDTD
WSSedA1TDRAFT_c018605WSSedA1TDRAFT_0186052F060457MNKNITDPKSSSSDLGIFLSTIFHIASIACVPFLVHATVNGNLYACGLLMAWTIYYSIRLFRSRKLLGLAFFVMTLSAVVFGIYNFGLMSQYKNSKIYLEEEKTFCRETTYETLKLKYETEKSMISTNFRICLDKQHVPPETCITEVNQATSLNEVMLGNRLL
WSSedA1TDRAFT_c020625WSSedA1TDRAFT_0206251F102133MEQPGQPPDRGGSKLKILDSLKTAALFLIAAGLFVMSFVIYDVMGKHGRYVPVSDDDEKVVVMDTHTGEVWSVNYESKETASLKIFNPIAGEPQIFPKKLIARVSN*
WSSedA1TDRAFT_c023764WSSedA1TDRAFT_0237642F100426MRNRIIYGSQSVWCNGEILYRVQTLGSTTTFTSEDIFELGHLDIIDVVDDVPAVAVTLNSNDWGDVRTMAILAQVKPAKLAM
WSSedA1TDRAFT_c024037WSSedA1TDRAFT_0240372F056714DMKQSVILLMILTIAVPLSAFAATLQNTDSQTYNLQIQESGRPYSSQYQVIENAQVDICFNGCEMTLLSTGQTVRVNPNDAVVIDNGVMNVTSGN*
WSSedA1TDRAFT_c024779WSSedA1TDRAFT_0247792F087857MKRNFIVVPLLVIAFVAFQIVPPAHAEPITLTIMAIAGITTVMTAAFTDMAVHGEAITQANSQQEKPAEVYAKDRSADSSKKQDGEATTVR*
WSSedA1TDRAFT_c025747WSSedA1TDRAFT_0257471F068995MKAEKKTEFVKAIHPSQPEWEYYLPKEDKALIKKLSKKPIFPKLCERPCTSVITLFPKDTVEGNTGKGYHMINIDGYRMINAYVISDPLNSTNQRGFTLELSFSLNNFVYGVGVIGETSYFFNFDSYFEPGTVSHKLQRCETNDLTTTGGLPLIGGVDLTHILRIPVMGPYVRAS
WSSedA1TDRAFT_c026067WSSedA1TDRAFT_0260671F062885MNLSTLREVPQANLGTSSACEVEVGPLRFKVWHKSPTYLCLLAGQDPSTLPEFREGETLTMAFHDSGSVLPAEHLKTAVRKIKRNEEGKLKGQYLVDLEILKSYH*
WSSedA1TDRAFT_c027250WSSedA1TDRAFT_0272501F098776MSVKYFDFTTPKFFLFRNQSKRLSIPQYHILILAWCALVILYGEPGPSPTFGHSEK*
WSSedA1TDRAFT_c030562WSSedA1TDRAFT_0305622F060458GIGLVCRYSGIQMRLEAVVRKIASLQEFIAKSCSDATVATAACRKKSGPQCVFDIIHESEKGVDPLFIKQVTGFKEQKIAKILYKLFKYGEIRIEPGGLYVAVAGR*
WSSedA1TDRAFT_c032976WSSedA1TDRAFT_0329761F049734MSESKNYGFQTQFTIVKKYHRHVLWLILGLLFALDIFTTSMSLHLGNFEKNPLMIPFAGNPALHGIVKLLAYIFLFFVIERAVIFIQERKPEKTPFWIKLNFQTLYGLIIFVLIYLIWLYLYVVAS
WSSedA1TDRAFT_c035211WSSedA1TDRAFT_0352111F031716MSRFSSGPWHVEEENGSYGVFSNDALLAVTLSDDLKDKDAAKANAHLMASAPRLLEVIKEIKEHLDNNMIVTGEGLKINDSHLRESIID
WSSedA1TDRAFT_c035371WSSedA1TDRAFT_0353711F057781MSKPDLRLLTQWLDPALVSRLEDRRHLKNEWRRHRKLATLETLWLMLAVSLD
WSSedA1TDRAFT_c036916WSSedA1TDRAFT_0369161F057771EFPIYGQLKLGGSQSEINFREGPGVNSKVLSTVSNSNLLVILPGEPKNGYVEVFDIESSSFGFVYEPLVKVTDTLHFQKQHFFEKSGENDTEDVEIELINRTDHSLFVWINKNVYNLAPHEKKELIFSDEDVIYFSSAPGLYPVFGREILKKGTSYKLDFSL*
WSSedA1TDRAFT_c039044WSSedA1TDRAFT_0390441F056185LPKEKELRANWKNYHTYCLGSYAMLFQLKGDQIIQRDDPWREVTSDEMASGCASFLIDSSPVMQLLGENEKIFGYVIYNFDDQIWASIIDPKTIRLFYHVHPKGP*
WSSedA1TDRAFT_c042394WSSedA1TDRAFT_0423941F007558PQLPPPGDESDADPIEACCTWLYENHTMGVNMSNAVKREGVVIIQNQNVEVLARIMPSMVKTLKLCDAMESSWRSQAEITINPQHPQLPPPGDESATDPIEACCLWLYENHTKWQDMQDLMKARYLEYVISRFKTKTEAAKWLGVGSTYLCKLSKTTMNN*
WSSedA1TDRAFT_c042600WSSedA1TDRAFT_0426001F103514KKISFNLKQNKKFIEIEVPGDEILQTVEADSLEFEKLVKQKVIEYIQSL*
WSSedA1TDRAFT_c042717WSSedA1TDRAFT_0427171F085853MIEGAHRFYADHHFEEIGRRMEESLTARQAEVEQLNQKKDQIQKSKEGLNNALKNIKTRFGKLGLEVEDAILLAPLALSALFFVAALQLCQNIQLRKSFHRLFQASDPQKVAITDAEIALAMPLWVDPLAAPIQRKIKLAALMIPAIASVLTLLVVFYCWTIPDAFSGLTGIDYMKY
WSSedA1TDRAFT_c044021WSSedA1TDRAFT_0440212F060102MSKKSAKNTDTQPPPAREEKESFFTMFSKIDSRQKHRILAYLFWLLGIFIILF
WSSedA1TDRAFT_c045750WSSedA1TDRAFT_0457502F019578NPCMEKSANGSLQVKKKDEAVGIFGADSSVVAVLPKKKTGDDTRVAEAYLFAAAPQLFEVCRTIHSILENSLIVTPEGFKINCSDIKISLRDAILRAKGYRKSPDEP*
WSSedA1TDRAFT_c047715WSSedA1TDRAFT_0477152F069004FTLDVGIDDEELIMSLLAGLALYVRKGNSIKVRQSYVTFSGSQEIVTKFISKTEQVGDWSKETKQILSALKKKR*
WSSedA1TDRAFT_c047922WSSedA1TDRAFT_0479221F019677ASFGNSVRSYMITYSTLEASRILGIEKSRVRNWIVKGYIIPSWHKAMARGDKHLLTYDNLCYIYLFQQFSSKGFHRTASAFIISEIEKTGLSKNLEFSFRYVIWNTKNPKEGGIVSISSEIPTAIIDALIVDDRRAAPRGSSQMLVIDLLEVKNEVDRKREKRGG*
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