Sample 3300000053

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300000053

3300000053: Coal bed methane well microbial communities from Alberta, Canada

Overview

Basic Information
IMG/M Taxon OID	3300000053 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0047444 \| Gp0053978 \| Ga0010792
Sample Name	Coal bed methane well microbial communities from Alberta, Canada
Sequencing Status	Permanent Draft
Sequencing Center	McGill University
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	201463969
Sequencing Scaffolds	19
Novel Protein Genes	22
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Hydrocarbon Resource Environments Microbial Communities From Canada And Usa
Type	Engineered
Taxonomy	Engineered → Biotransformation → Microbial Solubilization Of Coal → Unclassified → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Alberta, Canada
Coordinates	Lat. (^o)	52.119	Long. (^o)	-113.78	Alt. (m)	N/A	Depth (m)	686
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001293	Metagenome / Metatranscriptome	729	Y
F001354	Metagenome / Metatranscriptome	716	Y
F001926	Metagenome / Metatranscriptome	616	Y
F003495	Metagenome / Metatranscriptome	483	Y
F004995	Metagenome / Metatranscriptome	415	Y
F010898	Metagenome	297	Y
F012849	Metagenome / Metatranscriptome	276	N
F014975	Metagenome / Metatranscriptome	258	Y
F017607	Metagenome / Metatranscriptome	239	Y
F032550	Metagenome / Metatranscriptome	179	N
F035754	Metagenome / Metatranscriptome	171	N
F039951	Metagenome	162	Y
F054611	Metagenome / Metatranscriptome	139	N
F077781	Metagenome / Metatranscriptome	117	N
F078238	Metagenome / Metatranscriptome	116	Y
F086630	Metagenome / Metatranscriptome	110	N
F096661	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Draft_c005541	Not Available	687	Open in IMG/M
Draft_c016890	Not Available	619	Open in IMG/M
Draft_c032993	All Organisms → cellular organisms → Eukaryota	1193	Open in IMG/M
Draft_c033672	Not Available	1290	Open in IMG/M
Draft_c051242	Not Available	633	Open in IMG/M
Draft_c052134	Not Available	621	Open in IMG/M
Draft_c052255	Not Available	808	Open in IMG/M
Draft_c059662	Not Available	1031	Open in IMG/M
Draft_c061562	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales	818	Open in IMG/M
Draft_c061771	Not Available	537	Open in IMG/M
Draft_c072511	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	769	Open in IMG/M
Draft_c073944	Not Available	592	Open in IMG/M
Draft_c077406	Not Available	640	Open in IMG/M
Draft_c328605	Not Available	577	Open in IMG/M
Draft_c329515	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	594	Open in IMG/M
Draft_c330773	Not Available	621	Open in IMG/M
Draft_c334773	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	748	Open in IMG/M
Draft_c359410	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	709	Open in IMG/M
Draft_c360136	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Haemosporida → Plasmodiidae → Plasmodium	1590	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Draft_c005541	Draft_0055411	F035754	DADGNVNVRLAYAYDTPPSRMGKGDQPFFLTSMTTLVSEKIDILXHSQASLEGKPLALKRSIQVSDGLRSYFSKITDLMQRNLLSWYEDDLVIAKDMVDNATELENDQGRSGLCSCACSPTVTSFMALNEYESLLSSLSIQEEALNAPLAHDMSRDSVEASASARIQ*
Draft_c016890	Draft_0168901	F039951	DLKKTIKNIKPKQSNFLLTLNTNMQYKEDDKHLKDDIEIFDGCINELLNNVDQYIKLPETDQWNEDTIKNCDIDYTIERGTKKGXLHIHIMFKIKHFTRIQLNYDKIKTKICDDLGLKNIYCYNRLLKPNDSDNVQDYINKYV*
Draft_c032993	Draft_0329931	F012849	STFTNLCIRNRHIIPGNIIIAIQSIMNVPKTIRLNANLLALFKFADSETVLEDVYPLFSAFVKEEQFKELYEYATKEPFDALVIDATRGKPVFKKNFDKVLNIS*
Draft_c032993	Draft_0329933	F017607	YFKKDIVKSREAFNELEKVRLNYKPTKKPLILDQSNIPPDMMNTIRNNNAFENEFWRTHNPYKFTPHIDYKPKYTPPYYAPQETGFGSFSYESYVNNLKRI*
Draft_c033672	Draft_0336722	F039951	MSNKPLIKVKGKIQDLQKTIKNIKPKQSNFLLTLNTNQQFKEXDPHLKDDIEIFDNCINQLLNNIDEYIKLPEGDSWDDKTIKNCDIDYTIERGMKKGQLHIHIMFKIKHFTKVQLNYDKIKTKICSSLGLKNIYCYNRLLKPNDSDNVEDYLNKYT*
Draft_c051242	Draft_0512421	F086630	TLDMFRLNSASLTFNTTDEGNQFRRKQQLTRNKFFFKCTRENPMPKHRWESYLRQVKAMVVDHFVRSIRHQSKNLPKHYETLFTGSEVPAGPIELSQVQRDKRKLGTMCHALIAEHMFTPNLDAQTGDDAIIDTFTQEDSVRATRSNSRGDRLLLDRKKAEWRRHLATVRSTLSEIFLWXIREVSTIEIQQDFEQVFRSHILQNQAAQGG
Draft_c052134	Draft_0521342	F010898	MDKINIYINSKNRDLNESISNFTVRIPQNLLRLEQGEHFSLNVNGFYCYNSWFNCIDGFNNEFQIIIKNMNDEITETYHYKLNDGNPNVNDVKTNLNGLLINKVLVSYDKQRNKFIFKRSLPVSTQNYTMYLNIINSEDFLGFYKSDRNI
Draft_c052255	Draft_0522552	F054611	MSDIDEERLQTLMELVNKENPDLDPYVIWVICVNYLLNEQGIYGDEEIAKQLREQRNHELKYDIKVI*
Draft_c059662	Draft_0596622	F054611	MXDIXXERLQTLMEXVNKENPDLDPYVIWVICVNYLLNEQGIYGDEEIAKQLREQRNHELKYDIKVI*
Draft_c061562	Draft_0615622	F012849	MKLLYKFNFVKFQDLEKPKYXDGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKHIILDDIYPTMS
Draft_c061771	Draft_0617711	F032550	YFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLIPQRIILISSTANSDSNIIFKSLKNLDWENDVIENYEDDLLKIKMEELKYDLDHSKDYKLYKEAWHNFVKCKSIDDLSDDELKILYSYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNI
Draft_c072511	Draft_0725111	F003495	MKENNEKKIKNCDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGR*
Draft_c073944	Draft_0739441	F096661	DEHAKKFLAKFSSDSKKRNQKPSLLLDDLRELGMFGELSEDQNHITMPFEDVHRLVTTMRMTEVILNERIQXKRKAKLDFLTSQLDASECNDMPALLAELEKTKAALKQKYSFQQVGVFGNEPVIELEGIIHFETLLLARAIDWLARLSIDPDSEARRGTLSVFSELKAAYSAQSSLHELYFHQYDDKKALEDRVRG
Draft_c077406	Draft_0774062	F004995	GFYKSDRXIXILLPYLNNVXSNXIXNILGDEAIXIKINGDCILAGNTVDNFGTETYEPSNIIFMKPIDVPSNGLLKYNNEDGGDSFNYKLANVEQITWFTLSVYNQDNEFIPNFSDYILLLQFIRHRTEEGRTEMALNTLIDYVKQIYLLISHFLFPATA*
Draft_c078184	Draft_0781841	F078238	KPEDPRNINKKMKQLFNDYYNKEKDIKNYNGVEFVAYDKEYSDEALDNDEYDKKNDEIDLIEKHFNVNINVYTHDEPELLQIDRRSITNYDDTLNLMRYNNHFMYIKNLQQIRHCYRCRKCDKIFKNMEACNRHEKTCDELVKHTFPGGKYNKSKSIFDRIEELYNDLIKKEKTY
Draft_c328605	Draft_3286052	F004995	SGDEAIIIKISGDCILLGNTVDNFGISTYQPSNIIFMKPIDVASNGLLKYNNEDGGDSFQYRIANIEQITYFELSVHNQDDEFIPSFSDYILLLQFIRHTTEENKLNSLLETILDYIKQIYLIISQIVFPPS*
Draft_c329515	Draft_3295152	F001354	VEDAAAHLFKTTNATIVAVFKVNPMFGTRVLYRAYTKEGRDKTNDGLDVGLFTQNAANNADVVRLMASEIPCGEYRSAQSEMGLWYIAKGVTYTCRISIPPDPSRFVGQITVGWDNE
Draft_c330773	Draft_3307732	F014975	MEKLFEQFKNMLVIYPKYQGYVCGYNDAHFIVAVETNDVKNFFRKMENPTIMEEYKDIKYRYIFADESDLLK
Draft_c334773	Draft_3347731	F077781	RPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAATNHRSSGHTCFRERMLRVSCRLSLDLSSSWVRG
Draft_c359410	Draft_3594102	F001293	MIRNSFICKLINVQASMKENNEKKIKNCDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGR*
Draft_c360136	Draft_3601363	F001926	VRHEDIPEINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRKRYERERIKIEKLLTLGYTTSGDP*
Draft_c371747	Draft_3717471	F078238	LDDKIVESYKGIEYVAYDKEYTDEALDNDEYDKKNDEIDLIEKHFNVNINVYTHDEPNLLQIDRRSITNYDDTLNLMRYNNHFMYIKNLQQIRHCYRCRKCDKIFKNMEACNRHEKTCDELVKHTFPGGKYNKSKSIFDRIEELYNDLIKKEKTYILYHNFNPIVPDKK

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