| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2236347000 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045864 | Gp0053903 | Ga0011250 |
| Sample Name | Hydrothermal vent plume microbial communities from the Guaymas Basin, Gulf of California - transcript assembly |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Pennsylvania State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 21125931 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 1 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Hydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Guaymas Basin, Gulf of California | |||||||
| Coordinates | Lat. (o) | 27.823 | Long. (o) | -111.4 | Alt. (m) | N/A | Depth (m) | 1996 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037503 | Metagenome / Metatranscriptome | 168 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| GBPt_c03590 | All Organisms → cellular organisms → Bacteria | 516 | Open in IMG/M |
| GBPt_c03592 | All Organisms → cellular organisms → Bacteria | 916 | Open in IMG/M |
| GBPt_c03595 | All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium | 516 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| GBPt_c03590 | GBPt_035902 | F037503 | MHLGAASESSVIEVELLIRLGGFTAYQTLINSECYDICPAVRAWVLRSMSERERTQTIC |
| GBPt_c03592 | GBPt_035921 | F037503 | MHLGAASESSVIEVELLIGLGGFTAYQTLINSECYDIYPAVRAWVLRSMSERERTQTIC |
| GBPt_c03595 | GBPt_035952 | F037503 | MHLGAASESSVIEVELLIRLGGFTAYQTLINSECYDICPGVRAWVLRSMSERERTQTIR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |