| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2228664010 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0047444 | Gp0053498 | Ga0010761 |
| Sample Name | Hydrocarbon resource environments microbial communities from Canada and USA - Toluene degrading community from Alberta, Canada |
| Sequencing Status | Permanent Draft |
| Sequencing Center | McGill University |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 87534765 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | 2 |
| Not Available | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Northern Alberta, Canada | |||||||
| Coordinates | Lat. (o) | 54.0 | Long. (o) | -114.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037711 | Metagenome / Metatranscriptome | 167 | Y |
| F037746 | Metagenome / Metatranscriptome | 167 | N |
| F043670 | Metagenome | 156 | N |
| F060932 | Metagenome / Metatranscriptome | 132 | N |
| F070928 | Metagenome | 122 | Y |
| F074119 | Metagenome / Metatranscriptome | 120 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 2231458091 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae | 6755 | Open in IMG/M |
| 2231464253 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium | 929 | Open in IMG/M |
| 2231464318 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | 914 | Open in IMG/M |
| 2231464996 | Not Available | 832 | Open in IMG/M |
| 2231465114 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon | 809 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| 2231458091 | 2231284422 | F060932 | MLLAGGAFVLTRTQDVAAQSPTPKNYPATVTVQNFTPAGEKIQLGISSAQASQDTLTLTLTMSGVDYEEKISNYRVTGFEKLVCNLYIVAEEPVSVMFQSYEVKPGDPTQVVYTYSLKGNITSELNLTIDWTIGPCAPAFDESNVKAPRNPLLTNYRFEFVVPVK |
| 2231464253 | 2231301993 | F037711 | AAPACNRSTLSQQIDAKKRTRFEAGRGQGEGRFKFLTLKNLDVID |
| 2231464318 | 2231302103 | F037746 | VGGNPMPVDIEWAKANDTVGQEFESNYIPGTTDKDLEDARVLMEKLLKKYGSRDALEADERDWAKYRKAMYVVASRSKDTMDRANKAREELIKRKNLLSQFFDNNREILFKLPEWARINLRKYTDYGLLIDQEYLWQALGELGEDGLAEHLLNVANYIYIDTGFMGGVRGDSEALKTGPVRSIYHRSTCKAQKTVHPSCNSGCNKV |
| 2231464996 | 2231303206 | F043670 | MDIIELVRGDKNPYLGKFRIEEYDLERDKVIRGSWQKNLIANKLKAALADVLTGDYDANKHVIGKLAVGAGSTAVAATDLALTTQLGSLKSYVPGSLHNNTYSNKSEATYYFDYTEADYYGTWAEIGLYAANGTDLLTHSLISPTKNFSNTKTMTVYYVIEF |
| 2231465114 | 2231303410 | F074119 | MSDIQVFEVLAKILPYLVTLGIGAFAGWELVKTKIHELAEFFKTVDEALYDDAVNENEFRAIWEKGRALFQWNFAEKKGEV |
| 2231479189 | 2231323029 | F070928 | MNPVFLSVVIITALLYFFVSPDTVKNQYIKIRACYALAGAVGSFILLYLIQLPFTGFNLLLWFSVNAAIALSLNSALTNYKNGAIVSGVALGVIILFWMGGITVLSALTATQLAAAPDVTVARGPSEII |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |