NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2222084000

2222084000: Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_dispersant_2



Overview

Basic Information
IMG/M Taxon OID2222084000 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0050523 | Gp0052442 | Ga0011219
Sample NameMarine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_dispersant_2
Sequencing StatusFinished
Sequencing CenterAlabama State University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size45956929
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available8
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM21
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → oil spill → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Alabama
CoordinatesLat. (o)30.15Long. (o)-88.446Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001040Metagenome / Metatranscriptome795Y
F002907Metagenome / Metatranscriptome521Y
F005727Metagenome / Metatranscriptome392Y
F008665Metagenome / Metatranscriptome330Y
F009400Metagenome / Metatranscriptome318Y
F011752Metagenome / Metatranscriptome287Y
F018292Metagenome236Y
F021968Metagenome / Metatranscriptome216Y
F024678Metagenome / Metatranscriptome205Y
F040079Metagenome / Metatranscriptome162Y
F072023Metagenome / Metatranscriptome121Y
F101262Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
2222088108Not Available515Open in IMG/M
2222089391All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2514Open in IMG/M
2222098421Not Available507Open in IMG/M
2222101959All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage504Open in IMG/M
2222165527Not Available540Open in IMG/M
2222166133Not Available539Open in IMG/M
2222168732Not Available534Open in IMG/M
2222177319Not Available523Open in IMG/M
2222177661All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.523Open in IMG/M
2222177710Not Available523Open in IMG/M
2222180387Not Available520Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
22220881082222090337F005727MIKALTRSRSADFHRQTMLKIIVIAGLTFLLWEPIKPVRVVTADVLYTAG
22220893912222092192F072023VIAFFDKDKEGYNMRTIGDRFFEDKDAWVVGKYGLEFLNAIFQIEQDEEELK
22220930792222097645F040079MYEVGMGVIRKYRTDVAVTGQITSVHEDADGETLVTVMYDDGAVKVYTENAMDNPRMIVTEEVIW
22220984212222105448F011752MSSPDISEKITMATTTEDIVAHVRGWSLDRAADKSISKSDARSILAEFYEWIEPEGEELEIVSLEPED
22221019592222110591F001040LSRKGGFGFPFLLFLIFIIKVTIWAVPRTKYEMFADIRYDGRLVDVLDRIRAIRLVLMVHIEQDLGPNKELVKIKILTPYPARRTFQAIRQLCLGKIETLKDMSYRETTLTKLS
22221655272222190093F009400MSSMTGLNATALYLWAGLDYYFFPLLIWQLVAGLLARRLLQAGIPTGWR
22221661332222191068F024678MRVALKLFLFFIGMALSMLGIMVALHSQQHTVLGVLILFSGVTTIWGSLPSYD
22221687322222195162F021968EYTSKLETIRENYFPSEVKKADEEQLHEQVEDTDADKEKAIADPFVAAVSNAIKKQK
22221773192222208321F008665ELRMQISRIVKENRLIDSKSFNELPPLMKEAMRDVFDLIEKETGNIIERFEGAVAKVSEFHGINIEKFYEYVDKEVREQLGEK
22221776612222208836F018292MALNGKLLKEKPSLKEVRDHFKGKGGGPESESHIVDCNADKKDGFVWVYSNKADATKIIDRCGDAILDYSFLDSGVQLKIARKAFRGIHCAFRNVKDKDD
22221777102222208917F101262TRANTARNRQRDAERMNEQSDGAGAISGRNPKGEGRSSS
22221803872222212978F002907MKQDPYWFFRKWGIQEPSPLEVLEKKIQELEDRVRLLEEENVGQSNALYECWNSLDARIDILAENKTDVRGS
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