NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2209111007

2209111007: Cave microbial community (Dry rock wall)



Overview

Basic Information
IMG/M Taxon OID2209111007 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0047522 | Gp0052438 | Ga0011208
Sample NameCave microbial community (Dry rock wall)
Sequencing StatusPermanent Draft
Sequencing CenterArizona Genomics Institute
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size195239798
Sequencing Scaffolds19
Novel Protein Genes22
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2
All Organisms → cellular organisms → Archaea2
All Organisms → cellular organisms → Bacteria → PVC group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-51

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSpeleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces → Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → speleothem → rock
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007548Metagenome349Y
F011197Metagenome / Metatranscriptome294Y
F013143Metagenome / Metatranscriptome274Y
F017228Metagenome242Y
F022737Metagenome213N
F030737Metagenome / Metatranscriptome184Y
F037481Metagenome / Metatranscriptome168Y
F038611Metagenome / Metatranscriptome165Y
F040821Metagenome / Metatranscriptome161Y
F045408Metagenome / Metatranscriptome153Y
F052571Metagenome / Metatranscriptome142Y
F059254Metagenome / Metatranscriptome134Y
F060269Metagenome / Metatranscriptome133Y
F061707Metagenome131N
F063667Metagenome / Metatranscriptome129Y
F083110Metagenome113N
F085308Metagenome111N
F085487Metagenome / Metatranscriptome111N
F090200Metagenome / Metatranscriptome108Y
F097540Metagenome / Metatranscriptome104Y
F102372Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
2214969687Not Available532Open in IMG/M
2214994938Not Available528Open in IMG/M
2215033008All Organisms → cellular organisms → Bacteria524Open in IMG/M
2215127715All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia515Open in IMG/M
2215156333All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium513Open in IMG/M
2215162452All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium513Open in IMG/M
2215176330All Organisms → cellular organisms → Bacteria512Open in IMG/M
2215194924All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium511Open in IMG/M
2215219445All Organisms → cellular organisms → Archaea508Open in IMG/M
2215220939All Organisms → cellular organisms → Bacteria → PVC group507Open in IMG/M
2215221381Not Available1039Open in IMG/M
2215229300All Organisms → cellular organisms → Bacteria → Terrabacteria group502Open in IMG/M
2215229533Not Available501Open in IMG/M
2215232366All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium500Open in IMG/M
2215240807All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia890Open in IMG/M
2215259127All Organisms → cellular organisms → Bacteria → Terrabacteria group2338Open in IMG/M
2215403274Not Available539Open in IMG/M
2215412717All Organisms → cellular organisms → Archaea537Open in IMG/M
2215438284All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5532Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
22149696872214029599F007548INDVLARHAGTAPVFTQGQRLYVDQPHDLYARFPGLTVGDFARQNGMDLAGLLTQLNALAESEDAAGQPATRARAVDEARPGQFSLTLGYTASHRPTEDSTPDSVSVVTVQSSRGPE
22149949382214061454F022737MGVYAELRGFVLTHRECGVLRGATKEFPGGGFRLAVICPCGARFGRSVSPQDPDADRLREALAVFQG
22150229752214096808F030737MGTTARTVVLRPSRGTARAGMARQVKQQRRGYAHAVLRGLACSQRGRPTARIQRVLRDSLIPLGVRLSPAALRELAAGIAAGRPVELP
22150330082214109347F090200MEARVTSQSQPFRLIERMEEAKIFHGQEVRADLPTVRVTALAGGRGGQALFCNMGPIRVREILNRGDDRPLSANITLEGLEVPISGTYDLLD
22151277152214225230F038611VAWMRMMGADSVAYHEATVMGRADDFPGRALAYYASRGET
22151563332214248059F063667GRLEEGKSLPLLEFLGSMRYRAEAVTAFLAALELIRLGVVRVFQARPFGEIYAARTKAPFLEEQVRDDYR
22151624522214251839F052571VAGWGDDPELERLRGLIEDGWEVVEISEDPSEAGGPADVVKLQKGSERAEVTSDHLAFHRYVEYLREEQRD
22151763302214259957F085308WVEMGRAHPLLVCNPSDMVVPWIGDVAAAPILADMVMAVVERGKDPKVAAKEASDKISRDIIGKAKG
22151949242214270358F017228TRIMSALGYLAAVNVVIWVGLFFYLWRLDRRISERERSR
22152194452214284683F083110LGLSKTPDRLADELFALDPRVRYVAVLDRNHKLVESRMRSSVHSLTGEEYDKKFMRSVPPLILDILAQLEAQVGFLSHISIQYERVDLVFSRSTLRFWHLV
22152209392214287026F040821RQTRPLLTLVIVALLLAGVLATACASGPVSDSKVVRWVDKTVAERQPPAADKRFDEIGWVTDVRTAIKLGKEHNRPIFLYTGDGRINTGRC
22152213812214287674F037481MSLQAMKYPALNVSAATAELVKSILTLYPQAQVVPRVTPLEDEEISVEVRLPLSMDEIYQARDRVHELVIRLQEQYDVLILASAVPI
22152293002214298991F059254VRILATRRYPGPAFDELEGVEVRPLAELDAARPDVEGLVV
22152295332214299320F013143MMSRFILGAIVGAIAVWVWGEEIRRFANTKGRSARLVAADTLQSVQSTAEEMFDTAKDQVTSTLQAGQDVIRPARVNRDRR
22152323662214303286F011197PGRDRSLVRKAFAPDDLSFQGRFLLESRTFGRGLVAVAAYDSNGYRSPDWVGFQYDSSDTEPKFYEGLPGLWAGIPYDFVWGGAGLEIPGLPDEVAGCLLAT
22152408072214315163F038611LGWMRMMGADSVEYHRQTVMARADDFPGQALAYYSSRGEAP
22152591272214340869F060269MGCRIEVFVRSGHTIDLSLEDGEDRVFTSALHEAWASPEAIGFKHLALGENAAILATEVVGYRLHGSVEKGSAPR
22154032742214531749F045408LSRFVERSRSGQPVDALLQDLRADFGLGGLVLRDAVGRVLATAPPDTGSRPAPRVTLTSDTLFAAGDETPRYGSKGLRLPDGGGRLTLQTARGPVSLDLWEGNEDGFGLDESRTLAIAASMLGLGMR
22154127172214543911F085487FMTQSPKLAWLNTTKGWVEGTADQAPGTFHAKVYSKK
22154127172214543912F061707MQVMRFATRVARAVTLVSFHTEVVESNIENATANLVDGVVEMRKRQGEVLLKGGTLKVLRMGRNVTPSRGYFYQITNQGIVFSSTPML
22154338152214570995F097540MNVRRMKRPSPALVVAMAALLFALGGTAGAVVTQAVPLAKRALVADN
22154382842214576693F102372LGTSLMDLKAVGKIEREVISTVRNPHVENQIDEVRELYYDGLYVRAYFPAKDHKRLFLEEVEITSPRFRIKHGLDVGASVAALKAVLGEPDETKGGIYSYFGETDGVHFVIESGVITKVRWELYLD
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