NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2199352036

2199352036: Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_sample_6



Overview

Basic Information
IMG/M Taxon OID2199352036 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0050523 | Gp0053125 | Ga0011323
Sample NameMarine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_sample_6
Sequencing StatusFinished
Sequencing CenterAlabama State University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size37685438
Sequencing Scaffolds24
Novel Protein Genes26
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.2
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → oil spill → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Alabama
CoordinatesLat. (o)30.15Long. (o)-88.446Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003154Metagenome / Metatranscriptome504Y
F003661Metagenome / Metatranscriptome474Y
F004907Metagenome / Metatranscriptome419Y
F007306Metagenome353Y
F009329Metagenome / Metatranscriptome319Y
F013470Metagenome / Metatranscriptome271Y
F013703Metagenome / Metatranscriptome269Y
F018167Metagenome236Y
F021645Metagenome218Y
F023998Metagenome / Metatranscriptome208N
F025617Metagenome / Metatranscriptome201Y
F028777Metagenome / Metatranscriptome190Y
F032445Metagenome / Metatranscriptome180Y
F034342Metagenome / Metatranscriptome175Y
F035970Metagenome / Metatranscriptome171Y
F036971Metagenome / Metatranscriptome169Y
F050774Metagenome / Metatranscriptome145N
F058202Metagenome / Metatranscriptome135Y
F063841Metagenome / Metatranscriptome129Y
F064645Metagenome / Metatranscriptome128Y
F066737Metagenome / Metatranscriptome126Y
F076119Metagenome / Metatranscriptome118N
F079711Metagenome / Metatranscriptome115N
F095596Metagenome105N
F097371Metagenome / Metatranscriptome104Y
F104970Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
2207127508Not Available520Open in IMG/M
2207128618Not Available519Open in IMG/M
2207131197All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium516Open in IMG/M
2207134937All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium511Open in IMG/M
2207137046Not Available509Open in IMG/M
2207137610Not Available508Open in IMG/M
2207139749Not Available506Open in IMG/M
2207140098All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium505Open in IMG/M
2207141344Not Available504Open in IMG/M
2207142887Not Available502Open in IMG/M
2207144578All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.500Open in IMG/M
2207154067Not Available580Open in IMG/M
2207158528All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium575Open in IMG/M
2207182968All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.559Open in IMG/M
2207183787All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.556Open in IMG/M
2207187112All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon546Open in IMG/M
2207190714All Organisms → cellular organisms → Bacteria539Open in IMG/M
2207191794Not Available537Open in IMG/M
2207194180Not Available533Open in IMG/M
2207194333All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.533Open in IMG/M
2207197913All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium528Open in IMG/M
2207198144Not Available527Open in IMG/M
2207198996Not Available526Open in IMG/M
2207199470Not Available526Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
22071259302208979917F009329MTPYELRFEIFKQAYNMLNDEFCNKFDVAREWNEKVGKLEIELPEFPSLGEVLERAETINDFVSSK
22071275082208982247F063841MAIYKEISSKVIIRKVMRDLKPNHANWIDDAVEWIGEALEH
22071286182208983929F036971RTFYKNQINNEGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSEEKYSGKEMMDPTDIDKGIWSEFAEEEMFNNMDLTDEQESELDVLMNLEAESKRGK
22071311972208987718F079711QLISAHHPNIAKTLQEDWDARQVRVVFNQVEQQEDLGFWLQVQALARDQLSCSLESWAQCPKDPSVSTALKFQTPLVQQGVSTQLLCSLQQLAKRIQNNWFGSTSKIGISTDHQDH
22071349372208993159F004907LNDWPEEEGFGSSDRAEYIRRIVETIDSERKFLQAEQELVTINKLTECPKNDTVRAYMKMNEKLAEGMVQ
22071370462208996133F058202MKSLRQIVELKKIDIVPDPELQAGQVSNYANPKSEAEKNFVGKHLDNVQQQLHPAFKNEAEQDAVFKGGSIKKDLTHDQAGAGHYKDGQDAEVYEQAINFVRENLTEDNLKAFDELAQNNPEAAVDFAMEIVSEVVEDE
22071376102208996890F023998MSKVIRNNKHAKRSTKTSSTRAARQDPELAGDSTVIELMERSGDRDLMTTILILHEEWALNQGYRSKQQAPGIKRQAASLKHLPRYVASDYKATSIKRQALKEIPPN
22071397492209000007F013470NGNETLWKKTIRQINDDLYKVYMSADVFTELEKELEIQDVAKYIKDGDVYAYDIIVKKNRLQEVLKRLEEFDC
22071400982209000510F018167LEFERLHKTTIFAIQKAGELVEIAYDVYSKGQLKRVNLPGVDLIGVDGKTYESKVTQFANKSQRAVRGLILKNRRQAGVYKDKLADYFVITDVKKGKACCIPSSHLYNIRDNGACVTANADPAIEDFFLNSYEQENGKDYFAEAEDFDYSYVRSF**ITQEQTSSTHL
22071413442209002332F003661MDPTTAALIAVLVAAGSEIIALLPIRENSWVQVIVKALKIVFPKR
22071428872209004628F076119MSDINKRYLFGSAVLFLGIFVLEGALGLFGIEESILFLVYWVFYFVWLFKGKDYLKKRSI
22071445782209007058F021645VKGIVTALQDVAAELKGIRNILASMWHSRYFDGDTDQVSPEVYADEYISTEECARRLGIT
22071540672209020839F095596MKTDKYGIEIKVGDFVFLDSYTGMEYGTSAGTIQQIKKIGSKRISFDVGYKNLRSAQFYFITAYTLVGMQKKVFNDGTFYYPMFVRTATNDQMYNSIISELKKGSDDKLTEALIKNETYKYENQLGNYKLRNSAYGFSL
22071585282209027206F025617MDRFLTYVSKYGGSPKPGILKSMPSLGGEYMNMYGLPSDRQYLIETKEGDLIGICSKTNKLCKFNVIDDTYVVQIPSIIKLKEALDNIPNVPLDPNFKIKSRFYR
22071829682209054847F050774MKIDLKMLTPILITALIGVIGWLFNTIEELQIAHSSMMTQLRILEKDLDMQESLFSELLFKISG
22071837872209056199F034342VKKPFKTPKNRALGASKESNFALGDIVSWKTWEISLENEIFETKEGLLIEIIEETRLENVVLIAKIMPFGASEYEFIPLFPSKKHKTGLFIACLARLRTQLTTI
22071871122209061729F003154MDTLSLAMNIFNGTYKDERGWKHYRVQDKPYDIRMHPMTLEWECSCPAYKFKRGTKTCKHIKEIQSNPK
22071907142209067547F066737MKWGEGWQAHIDEPTHKVPFDVSEFPVSFTTYDLDFVRRKHLGF
22071917942209069287F028777MLGLFGRNKPLSTFEIISLEKNISEAKKIRYILEVEGFICTLDKEFSASGNLRKVVHRLNNSYNLSIYKEECNCDNKQKANLN
22071941802209073012F035970AEQLATDYGNEGWTGDCNDFTQASSSVSQELTNREVERLWDEFANQELLANGVIFTFTRKGRDKIINLSQADKN*PF
22071943332209073244F032445NMDFKPFNKHLWIVPQEEQQDKEDPLFIMPDEYQPPKSPYVIGSIMDMADDCTIDLLPGDTIVVERSTIQEIKGDFETIYVVKENYVYGRINDETDK
22071979132209078754F013703WLITGNYGKVIRNDINQVGLLSSSIGRISRENFLNLNLMYGYKYPIQFRDNTINLQTFVSYTIFRYYEGLKTENKYLLLESPILIYPGANIDINFTETFKMNFGFYIGYNTLVNDLGERNISYSLVFGTNF
22071981442209079095F097371MAKTLRTSGDYTVKAGAGYDSGSGTNTIRLDARYVRIP
22071989962209080366F007306MSWYIGTLEECNAYNAKVNEAKQYKGSITSNWANPKQHPDGSKWAIVAHSTEPDEESGLTLVDELTEDWTPIEAP
22071992592209080794F104970MAQDELLSLFPTPVLIAQYPMPYDKELEFIRELPCRRENKGGDAGNVIHYNRQSEETFVLDKPELSNIRAFI
22071994702209081101F064645VKGIVTALQDVAAELKGIRNILASMWHSRYFDGDTDQVSPEVYADEYISTEECARRLGITDQTVRNWILQGKKDPKYGWKQGLHYIVIPGKQRNTVRIPWNQLIVSFAKGKEVTL
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