| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2084038005 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046239 | Gp0051832 | Ga0010914 |
| Sample Name | Acid Mine Drainage metagenome from Dabaoshan |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Sun Yat-Sen University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 11409966 |
| Sequencing Scaffolds | 1 |
| Novel Protein Genes | 1 |
| Associated Families | 1 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Acid Mine Drainage Microbial Communities From Yunfu, Dabaoshan, And Foukou, China, Of Pyrites, Lead-Zinc Tailings, And Polymetallic Ore |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage → Acid Mine Drainage → Acid Mine Drainage Microbial Communities From Yunfu, Dabaoshan, And Foukou, China, Of Pyrites, Lead-Zinc Tailings, And Polymetallic Ore |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → acid mine drainage → acidic water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Shaoguan,China | |||||||
| Coordinates | Lat. (o) | 24.61435 | Long. (o) | 113.6714 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042121 | Metagenome | 158 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| DBS_contig16778 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha | 1034 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| DBS_contig16778 | DBS_00034920 | F042121 | MKESVSTFPVKRRRRSSAEVAALLSAFEQSGQSIRDFCRQHQMQVSSFSSLHRRHAGKHSSARSLPTAEHHATATTAFFPVEIVEDRRMSTVAVKSSGLIVEMAGGIRITVERDFDGLTLRHLMAVLCEA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |