NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2044078019

2044078019: Concrete drainage pipe biofilm microbial communities from Ohio, US, sample, 12383



Overview

Basic Information
IMG/M Taxon OID2044078019 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046156 | Gp0051670 | Ga0010973
Sample NameConcrete drainage pipe biofilm microbial communities from Ohio, US, sample, 12383
Sequencing StatusPermanent Draft
Sequencing Center454 Life Sciences
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size264174340
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-53
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → unclassified Azorhizobium → Azorhizobium sp. 32-67-211
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium ADurb.Bin3411
All Organisms → cellular organisms → Bacteria2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameConcrete Drainage Pipe Biofilm Microbial Communities From Ohio, Us
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Storm Water → Drainage Pipe Biofilm → Concrete Drainage Pipe Biofilm → Concrete Drainage Pipe Biofilm Microbial Communities From Ohio, Us

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → artificial channel → biofilm material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Surface (non-saline)

Location Information
LocationOhio
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018415Metagenome / Metatranscriptome235Y
F025775Metagenome200Y
F026170Metagenome199Y
F031548Metagenome / Metatranscriptome182Y
F052685Metagenome / Metatranscriptome142Y
F063339Metagenome129Y
F084812Metagenome / Metatranscriptome112Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
MiccSRB_F31IBB101DY3GLNot Available530Open in IMG/M
MiccSRB_F31IBB102F2D3VAll Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-5544Open in IMG/M
MiccSRB_F31IBB102F8RSONot Available537Open in IMG/M
MiccSRB_F31IBB102FRMKEAll Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium539Open in IMG/M
MiccSRB_F31IBB102FSYUIAll Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → unclassified Azorhizobium → Azorhizobium sp. 32-67-21507Open in IMG/M
MiccSRB_F31IBB102GLB8GAll Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-5535Open in IMG/M
MiccSRB_F31IBB102GZROHAll Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium ADurb.Bin341509Open in IMG/M
MiccSRB_F31IBB102HQPODAll Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetae bacterium HGW-Spirochaetae-5538Open in IMG/M
MiccSRB_F31IBB102JBSEOAll Organisms → cellular organisms → Bacteria509Open in IMG/M
MiccSRB_F31IBB102JPA5UNot Available551Open in IMG/M
MiccSRB_F31IBB102JVOD6All Organisms → cellular organisms → Bacteria534Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
MiccSRB_F31IBB101DY3GLMiccSRB2675000F026170ARVAKQRSDEEQKAVETILRALAHRLQRLRDEAAMQALRGETDPGVEKGLDMALRELNDLLPRRKRVR
MiccSRB_F31IBB102F2D3VMiccSRB12980600F084812MSKQSNLSLDNWSKGLLISLITKAISSDKDMTPDDIEKLKEIKKQLQEI
MiccSRB_F31IBB102F8RSOMiccSRB6591170F025775MKQLMTFQGFPMVLVVGLIVWAWISVLSVLVASFF
MiccSRB_F31IBB102FRMKEMiccSRB13054840F052685VKRTQAARVRKALDYVKKRLKLDLEFVVEPGEVHEQFGLLDIERSMRGTEDRKVWVVSFDPELVSKESLAALRRHAFHEVLHALTWPLFDEAEAAIRRVPDSSLRKELMDRSIDARENVVYELERKIGPLCFPSLPWVDP
MiccSRB_F31IBB102FSYUIMiccSRB8906300F018415EYLYLGLQDKSYLIPAPNPGSPSDRVHLDDHSVRVGVNYKLPWSLLDIFYKR
MiccSRB_F31IBB102GLB8GMiccSRB9043810F084812MSKQSILKLDNWGKGLLISIISKAISSDKDITQDDIEKLKE
MiccSRB_F31IBB102GZROHMiccSRB3852270F063339TARRVANPKGAQTMNATQNAVGTTDQFHQTWQALMQQLERVLSLAHQRQPNRTETREAVSIAKHLLGKVGDQIDAAIQE
MiccSRB_F31IBB102HQPODMiccSRB2380330F084812MAKESSLKLDNWSKGLLISIISKAISNDKDITQDDIEKLKEIKKQLQEIN
MiccSRB_F31IBB102JBSEOMiccSRB11314630F026170EQRSDEEQKAVETNLRALAHRLQRLRDEAAMQALRGETDPGVEKGLDMALRELNGLLRAGSG
MiccSRB_F31IBB102JPA5UMiccSRB2853410F031548VTFVGGGVAMADGWKGEGGRKGHAYGHYKHGGYPHHGYCAPRPVYVERQYYPVVIERHVYHPAPSGYFFGMSVVEPGVAFSFGVSGR
MiccSRB_F31IBB102JVOD6MiccSRB7981440F026170MARERTEGEQKAVETILRALAHNLQRLQEEAEMQALRGEVEPGVEKGLAMALRETNNMLPRRKRVK
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