| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2043231004 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045617 | Gp0051647 | Ga0011083 |
| Sample Name | Sediment 2 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Soedertoern University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 49174289 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From The Landsort Deep, Baltic Sea |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Sediment → Marine → Marine Microbial Communities From The Landsort Deep, Baltic Sea |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine benthic biome → marine benthic feature → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden | |||||||
| Coordinates | Lat. (o) | 58.58333333 | Long. (o) | 18.23333333 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006421 | Metagenome | 373 | Y |
| F013616 | Metagenome / Metatranscriptome | 269 | Y |
| F040946 | Metagenome / Metatranscriptome | 161 | N |
| F063186 | Metagenome / Metatranscriptome | 130 | Y |
| F082572 | Metagenome / Metatranscriptome | 113 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| sed2_GCH9ZVC01AS1MF | Not Available | 502 | Open in IMG/M |
| sed2_GCH9ZVC01BJYTE | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 513 | Open in IMG/M |
| sed2_GCH9ZVC01DQ707 | Not Available | 558 | Open in IMG/M |
| sed2_GCH9ZVC02GCSM9 | Not Available | 502 | Open in IMG/M |
| sed2_GCH9ZVC02IILY2 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 502 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| sed2_GCH9ZVC01AS1MF | sed2_1537380 | F082572 | SQLVSICPSTQEHNTASAAVTNANNIGEDIVVLTLSMSCDTFWDYETELHVDRKQFSRKYTNRPEEEAFQTLSQFMCLHMKKHIEDELINDGKRNMLAKLEEVFPKFHIHGQTSHEILYPNDPSNSDHCRGDGKIFICTHC |
| sed2_GCH9ZVC01BJYTE | sed2_1712390 | F063186 | LRLANNFYFDPMSVTNRGGLYEMQYPFQPNIKVVGTVGLQGSNRVVLGPAKQIVAGTDLMSDFTEFQLWYDINTDTLRHRIFN |
| sed2_GCH9ZVC01DQ707 | sed2_1693270 | F006421 | MPFGYPALTPAYGLGSYGRTGAAVLISSPRTKNGSQGRIYAYMKNHGQGQQYISFLLKVLGPRPSGAGPWTGI |
| sed2_GCH9ZVC02GCSM9 | sed2_1756850 | F040946 | MYPKLKIESDNHETIEIETLPVDFMMYEELQGIKPASEQGMRLTIAYYYLEDKEPGNLATVKLWARRNRVKVEMVSESAEPFTEGATAG |
| sed2_GCH9ZVC02IILY2 | sed2_1602890 | F013616 | YTEDSNYFPTHLCVSPNIWEKLGGQLDASKRPVLGYTTNGVAGQNALGRVGGMGYNDMDVMGLKLVVDNNFASNTMLVCYAPGFEIYEAQQGIISNVAAGGILARTFVYYGYFATFVAKSSFIQSIAIA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |