| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2020627001 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045482 | Gp0051392 | Ga0011033 |
| Sample Name | Viral communities in wastewater treatment process (AS) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Illinois, Urbana-Champaign |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 23476721 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 4 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Wastewater Viral Communities From Wastewater Treatment Facility In Singapore |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Wastewater → Wastewater Viral Communities From Wastewater Treatment Facility In Singapore |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Singapore: Singapore | |||||||
| Coordinates | Lat. (o) | 1.332 | Long. (o) | 103.756 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F043390 | Metagenome / Metatranscriptome | 156 | N |
| F082381 | Metagenome | 113 | Y |
| F083890 | Metagenome / Metatranscriptome | 112 | Y |
| F098918 | Metagenome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| VrWwAS_contig00143 | Not Available | 543 | Open in IMG/M |
| VrWwAS_contig05753 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 568 | Open in IMG/M |
| VrWwAS_contig19489 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii | 506 | Open in IMG/M |
| VrWwAS_contig45636 | Not Available | 510 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| VrWwAS_contig00143 | AS_223410 | F083890 | MSHETFAPKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARRRASAEQKA |
| VrWwAS_contig05753 | AS_395890 | F043390 | VAEMIMGYMVKNEDSQKVITLTLTAEQLEVIDGALEMYCMGLAEQNDPHLKYATNAHEAIYNVLESNFGVEA |
| VrWwAS_contig19489 | AS_761320 | F098918 | MNATIIFQTALMDKMYDNQDYDGMSMDDRMKMAESCGLALRKLIHTYTGLDTHKIEEFL |
| VrWwAS_contig45636 | AS_214010 | F082381 | MGKENIKLKRGGKRPFSGRKKADYQTKTIAFRVRVQWVEAIKSMVKDKIADLSQNSS |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |