NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326755_025845

Scaffold Ga0326755_025845


Overview

Basic Information
Taxon OID3300034628 Open in IMG/M
Scaffold IDGa0326755_025845 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)587
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.7528Long. (o)-44.9788Alt. (m)Depth (m)2961
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003410Metagenome / Metatranscriptome488Y
F014983Metagenome / Metatranscriptome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0326755_025845_157_348F003410N/AMKILMVLATGAIITFQADERTNPDCFSKGYEIMEKIATYQGPGPEQGWILNDSRVEIAGWYCQ
Ga0326755_025845_2_160F014983N/AEETLTNQKETDRAIKAAVDQAKKVRTHCAVCGCTPKPDEWSARIDNCCFDCA

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