NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326755_002988

Scaffold Ga0326755_002988


Overview

Basic Information
Taxon OID3300034628 Open in IMG/M
Scaffold IDGa0326755_002988 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1716
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.7528Long. (o)-44.9788Alt. (m)Depth (m)2961
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046089Metagenome152Y
F061374Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0326755_002988_1481_1690F061374N/AMDWINAPTKIATEAGRNVGGIKASKTISLPISYWSLLEQVRDHKRFKNGNEAMCYVIMEKAIELGLEVG
Ga0326755_002988_3_329F046089N/AAKDVTLESFPTVDHIATGATTTIVYPNSYKGVAISAAIINQDATNACTISLNGSTSFSLSAGAQFNVNDQNTVSIKITAGAAAGVDVVAQVAPTLLTTERARFAFERG

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