| Basic Information | |
|---|---|
| Taxon OID | 3300034628 Open in IMG/M |
| Scaffold ID | Ga0326755_000351 Open in IMG/M |
| Source Dataset Name | Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5996 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 14.7528 | Long. (o) | -44.9788 | Alt. (m) | Depth (m) | 2961 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000704 | Metagenome | 928 | Y |
| F001922 | Metagenome | 617 | Y |
| F003616 | Metagenome | 477 | Y |
| F014859 | Metagenome | 259 | N |
| F064236 | Metagenome / Metatranscriptome | 129 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326755_000351_1318_1800 | F001922 | GGA | MVIQKLLIEEGIKRGLKESQKYSVSVLGYDFIGLVSRLAVFFVMAFLINSYFIATIQGGIWLNSLGGFFNMKFPTTLPEWLTQLFTTGYKGFTFWNLVTTISVLIIVVEAMQYDRMLKEKGQKPNVTTLAVFGVIALGLSLITFPTIIQKLKERRILNAS |
| Ga0326755_000351_1_204 | F064236 | N/A | AVQPTATGLGAAANAITGGGGIMQYNMPRGKGIPLANNVTITNYFTNRDARAGGASNFINFVRYSKN |
| Ga0326755_000351_205_945 | F000704 | N/A | VAKMPHETRDIQPSQVKSQPVYDVGSYGEDLFLPLTDVGLTETALTFSTATVTRDTSDSNQPIDTYPRVFSDTDSGLLLNEGNDTAFNQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLSLGGLHIKITERSTNARLLYENTFQSGAATLGATGTQMHWFTQDIVETIKINKGNPVDIQLDLVTVVTGSNTRQEGYAPVAPLLKTAVMKPFFESGMSLHLHPDLSHADGVFKYKKDRVSMLGQ |
| Ga0326755_000351_3324_3551 | F003616 | AGCAGG | MIWSEKLGKEIGTYSSLGGLRINPKPFIQSTENTTVICRICKGVGCNSITHPNGLVTLNPCVLCKGKKRRTNRIG |
| Ga0326755_000351_935_1318 | F014859 | AGG | LVNELIPPEIIPIIWFAGITISVYFFFRKFSDVIKARITHTTRKNKTVDVEETGNQIDNLINNAPRILDEVNKEIESQREKGVTDEQMKGLLQKKQLLELGTSIPPEVYNIVAKPLMRKLIGFVGKI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |