NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348337_050697

Scaffold Ga0348337_050697


Overview

Basic Information
Taxon OID3300034418 Open in IMG/M
Scaffold IDGa0348337_050697 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1673
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.149325Long. (o)-75.288339Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006109Metagenome381Y
F017824Metagenome238N

Sequences

Protein IDFamilyRBSSequence
Ga0348337_050697_103_399F017824N/AMNPLQWDLDRDRKLGEGVSRTSSERARVFELQIWLPGQGAMRDLVRAESLRQAIEFAKNRYPNCRVDVPPTAAKKPKLARSTTSPSVAAKTRKKLADK
Ga0348337_050697_396_605F006109N/AMTRYAVMAGDRWVTAVYGPGKGIGVTRTKEDASSWPTYEQALAAAQSVAQCTHSFVAVHSVDEPAYSGK

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