NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335013_0048775

Scaffold Ga0335013_0048775


Overview

Basic Information
Taxon OID3300034284 Open in IMG/M
Scaffold IDGa0335013_0048775 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3078
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008812Metagenome / Metatranscriptome327Y
F057320Metagenome / Metatranscriptome136Y
F086678Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0335013_0048775_1217_1612F008812N/AMETKQETKRNGQMIQWVGIVITILGLAYTGIKDYQKGDIKFPPMPQKPVLTKVVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYATQAQPYQAQGQEAVGSTHGPQGASVYRYGQSPQASTNPIR
Ga0335013_0048775_2208_2465F086678N/AMSKVSRGRIMSKYYIKCGTLELIYSCNKCPRDAAMDAIWETNENDTLDEHFYIDERGYKDYVTADGFTKVLHTSHILKDAGWSIE
Ga0335013_0048775_2438_3004F057320GGAMSYVGLYDDAGSKNAFYIVKDKKIGRKRVGFKEFENEQEAQFAHRVQKHLAQFDLAPMVYGDVGFIRRHDGEMTCYGYLTEVARPMSECHDEDCDGECFQSECKNGTTISELVYDLGEHGLEYNDAHKGNFGYVRRKGSWVPVAIDLGIESFTDWDEDIYGKFDYGPDEFDDYGRCNCVQCQKFREEE
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