NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335052_0624619

Scaffold Ga0335052_0624619


Overview

Basic Information
Taxon OID3300034279 Open in IMG/M
Scaffold IDGa0335052_0624619 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)538
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013085Metagenome274Y
F016809Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0335052_0624619_223_537F013085N/AMDILNEIIEASNHMIDALEESDFFLENPFLEQIPLKRALQIRMQQKWEQEEEIHLSDEEFLDVCQSVSNNEIANTIESLVDKGALNMSVNEDGEILYSANKDYEW
Ga0335052_0624619_3_236F016809N/AMKQQLTGSIGGDEDFLYEQYIAQEQMNEEYWQWKNQQSHSIFPEGMEYDDEYYKSSYLPTPDEEAENYKQLKQNGHS

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