NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335052_0031494

Scaffold Ga0335052_0031494


Overview

Basic Information
Taxon OID3300034279 Open in IMG/M
Scaffold IDGa0335052_0031494 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3305
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017485Metagenome240Y
F021979Metagenome216Y
F050949Metagenome144N
F054034Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0335052_0031494_331_624F054034N/AMLTISTFKKLEGLALKDGLKVESIFEFNERYSIWLSDGTNIEIERNRHWKGGNYTYYKMYIAGGTSAMTEFIMIQTINTLDRMVKHLIYIHEKYINK
Ga0335052_0031494_51_320F050949N/AMGMYWVVDKIIDDTNEYLILIENRKGPKEIFALNKQNLYGIGYEFGISAGGPGMQRMYKVKTYIPIETISDKRLLIKRMTEMIDTSYDI
Ga0335052_0031494_626_952F021979N/AMLTIENINIIKSKFAGTPEWQIGEMFIGSQNYVFVIHKRVGEWIIGDVKHSELTVRLHRVKVIDRYVMETGLVKQNYHRRSAYSIENMRTINDFTLCLDRHIKNIVKQ
Ga0335052_0031494_956_1111F017485N/AMNNELKRKDILEGITFILMVVATIGMFCLLYEVKELRELTKGASNFRTIRK
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