NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370515_0005367

Scaffold Ga0370515_0005367


Overview

Basic Information
Taxon OID3300034163 Open in IMG/M
Scaffold IDGa0370515_0005367 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6313
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9123Long. (o)-147.839Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044611Metagenome154Y
F052071Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0370515_0005367_3308_3787F052071N/AMAIPAPIEQSMTSGQIDQRRRRHFVEGLRAVADFYEQNVDAYYDGMHITLNMYVWGGAARHTLRGMARAFGQCNKVYDDRNITISRKFSEQITVAVFAPRAKVCRRVVTGACMLPARIVPATKEIRIPPARIEIVEWHCNPLLPDDARSWPSYLDLDRP
Ga0370515_0005367_622_1311F044611AGGAGGVREMKKANGHPVEQDMYERIFAEVRNPSDMRQAIARAVRQLREALEREDNCAVTAAHVRNLTDIDPEALAMAYTLAEKTCTYWPSPGQIRELAGWSEESRGGAALEWVFSYLEKHGCEGRAQGGGVRFGDDETGRRVLLETEAIVAAPALPTEIEIALSLLGSGSTKQGLRYVSQHPVVKGWDNFSGDAASRSAERIEGQWIRCYRRAMRISHGAIASSSHLPPLRRTQ
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