NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364925_0260210

Scaffold Ga0364925_0260210


Overview

Basic Information
Taxon OID3300034147 Open in IMG/M
Scaffold IDGa0364925_0260210 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 44_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)646
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037362Metagenome / Metatranscriptome168Y
F038297Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0364925_0260210_219_368F038297AGGMAQAAKLTRENRTITVDFHDETTYFALVGNTKAFVEFVLAFGRVPTRCG
Ga0364925_0260210_483_644F037362N/AMWAPLPVAPVNETDMVLLPKGLQTLKHVAKNVGVDLRGAYLNLDGGFDSTHNRK

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