NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335056_0045645

Scaffold Ga0335056_0045645


Overview

Basic Information
Taxon OID3300034120 Open in IMG/M
Scaffold IDGa0335056_0045645 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2891
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetes incertae sedis → ac1 cluster → Actinobacteria bacterium BACL2 MAG-121220-bin52(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037710Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0335056_0045645_509_1804F037710GGAGMITLKQKILKQRNLLSYVLICLALMLLASSFLDLPPLIGNWENKAWSIINLELSDNYYPPGAAIALIPFLWAGPEFWPAIYFYYSLSAGVYFKLCQFVTSNKLRLIALIALPANSYLTWLCLTSADQVIELLTLLLFGYNAAKSRFKSALFFGFLLCFTRPAYWVGYLIIIYLMGKQRSREDRRTKQIVQKSAAVWVLLGVLSFNQIVFGSSNLSTSSSDTIFFSHQKYHYLSLPKFDMDVFLKNGQSTNPGSVVKNTNKLEFIEDPKTRGALVSILDNPQRFVFSEIQKLDSYFFPIQKVPNLPGQYELSPDEKSIIIGDERLTWSLTIGHLVFAIYRAFWMLLFACTLTWFALLLFSRTRFSGPEKYLLIPFIAGVIPGLLYYVETRFKICAELLAVPLHLIALQNLKQLGKSSGFAQLMVGIRRKNNE
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