NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335054_0000263

Scaffold Ga0335054_0000263


Overview

Basic Information
Taxon OID3300034119 Open in IMG/M
Scaffold IDGa0335054_0000263 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29221
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (21.13%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F012010Metagenome / Metatranscriptome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0335054_0000263_21035_21625F012010N/AMTEIFIRLIKENLTPNTYYVLHCIKEKIVPNNFVNKELECKRLQKDQWLDENLHLTSKSIIFMEEINGFFKRTKKKTSTDLMGAEFLQKIQEYVEIFPNRKLGSGKYARVNAKNLEAGFRWFFENYDYNWDMIIKATEKYVDEYSVRNYDYMRNSQYFIRRQNIDKSFESDLATYCELINTNPDEGGDSYFKERVV
Ga0335054_0000263_9748_10266F000716GAGGMSLFLFMILKMYKMEKLKQDVRNYQLSAGKTYMQYETDGYSQYQNYLYKRALYGLDALTQQELATMCSKKKQRIINVYKRAQVVLNKFKQEVTIQYSNFIFKTLFPNSPITDALLADNETDEKFKNTLTFKDLGIQKEQIITIFMAEGILPKNFLSLDKDPNQLPRLKNAGK
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