NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335063_0028940

Scaffold Ga0335063_0028940


Overview

Basic Information
Taxon OID3300034111 Open in IMG/M
Scaffold IDGa0335063_0028940 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3553
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023834Metagenome208Y
F026864Metagenome196Y
F055450Metagenome / Metatranscriptome138Y
F068766Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0335063_0028940_1067_1312F026864AGGAGMMTEEESTAQFVFTVVIAPANKRFDVELWDFAGTEPKQLATGEGTNWRTALGEALSKIELPTDKVEKTINDLVKESAEDER
Ga0335063_0028940_1_282F055450GGAGGMEAENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLSGNTIPVVGVRIRTADGRGAPILKENIHRSTDQ
Ga0335063_0028940_355_609F068766GAGGMTEDNVVGFHPKNKLVNFYEIATEEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGVQ
Ga0335063_0028940_768_929F023834GGAGGMSEPTVEYWRAKADLCRDLALIQIEDENTEKEAGMNLMRMVHALSMVDTFNED
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