NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0142381

Scaffold Ga0335036_0142381


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0142381 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1715
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F002738Metagenome / Metatranscriptome533Y
F025982Metagenome / Metatranscriptome199Y
F043890Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0142381_1118_1504F002738AGAAGMSIDTYGLPSEQYEEFFEDNIRFAAQLYLKTCNILSAEGAGSVDFKTVLDMYQENVYATNDDCRRYQKTNNPEVIKDNDIFGLSPSREELMEEIKSVNAKVEALNDYVAELVAVTTKGLTGIADRLVN
Ga0335036_0142381_1494_1709F043890N/AMQNTSSLGILNPDSINKLHIECIEEDDGSMTIHIEWDETDPDLQWWTDLGPENQETFMINALREACDCYVD
Ga0335036_0142381_1_195F025982N/AMSCHDHAIKDFDLQLEMNGLQLDMLKENGEVIPYHLDEHSDLEEKKLKLLVGKRFHQNSSNAYWY
Ga0335036_0142381_218_931F001018N/AMTQITQAKLKDLTVIKLYEHYNALEKSLPLLTPESQELAKAELESCANLRSEKIDRIYYAMASHEDALERIKKEGDLITQSKRHHESQLRSLKGLLNYLRRGLPLDSNKITGRNYQFTLVKKKELTVEVSSDPEFWHTTERELYCVTEEVTTTKRVVLRSMSGEVLDERTEPKTTTKVLPNLDAIRSAYQEGRQLPHGVKVVQEYSVRSKRIFGEPRVEMVSSEYPGELLPEDSSAD
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