NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0074710

Scaffold Ga0335036_0074710


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0074710 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2533
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023834Metagenome208Y
F026864Metagenome196Y
F046686Metagenome151Y
F055450Metagenome / Metatranscriptome138Y
F068766Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0074710_1124_1303F023834GGAGGMSEPTVEYWLAKAELCRDLAVKQIIEGDEKIGKEAGANLMRMVYALSMVDTFKQGGRDE
Ga0335036_0074710_1432_1689F068766AGGAGGMTSEDNVVAFHPKNKLVNFYEIATAEGSAVWGGEDPHSAVEWLKQSPLNSRLLVSCWEAGEEDARLMIEPIDITKVVFAVMAGMR
Ga0335036_0074710_1759_2067F055450GGAGGMTEASNKRLIGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTVPVVGVRIQTAEGRGAPATKGSSDRSTDEGNDGGEA
Ga0335036_0074710_2151_2348F046686GGAVRAGLTTSQITPEVRLTELLNSLESAVESLNYKSFVAYDTLNTAMENLRVALSNIVTEEDGTDTL
Ga0335036_0074710_753_971F026864AGGAGMMSEQDKMAQFVFTVVIAPANKQYDVELWDFAGTEPKQLATGGGSNWRTALGQALSKIELPTDKEGKENEEV
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