NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335036_0060124

Scaffold Ga0335036_0060124


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0060124 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2877
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006885Metagenome / Metatranscriptome362Y
F010599Metagenome / Metatranscriptome301Y
F028423Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0060124_151_513F010599GAGMEMTLVIFFATLSFSFGIAYWATFDKLKKSNLLMAELFIKNKALEELTSQIKNSMGMSADSVHKENFIKFLSDSRDWAFEYIEQSQKTIKEVSEELKDKGLDNYSKKLLALLPETNQEKK
Ga0335036_0060124_2308_2736F006885N/AMEYLLIIGLTLLCSWSIIKISNKRRIIFLGKHKYRQSSIYEMVKDVIPKQTFDKPKVITQSQKHIQKNMLRVVITEGKAYWILDNVFYTANAINGRVDEETIKPLDVEGMPAKELDKMLSILDDLKQGVGPNDSGSSGNKRV
Ga0335036_0060124_2738_2875F028423N/ALIQLLTFYKQKLSDTELELLKLQLEVNKLNSMVLSLAKGPEKKTK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.