NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335036_0031981

Scaffold Ga0335036_0031981


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0031981 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4132
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003962Metagenome / Metatranscriptome459Y
F011649Metagenome288Y
F019450Metagenome / Metatranscriptome229Y
F098901Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0031981_1809_2018F098901AGGAMKKIALRKYKVEYKQTETFVVDVYAINQKEAEKLASKKFDSGDYQETGDCQVELNSVYDVTNTDDPFNP
Ga0335036_0031981_2387_2542F019450AGGAGGMENTKHSYAVYNSIGQFFARFTSYSNALRWAVRNGMEWSAIIRKERETQAK
Ga0335036_0031981_3643_4131F011649N/AMACGSGFTLEKAGALVGVNANTIKTWASRKPEFARRVETARKKHELSLLRDIELAGAKSWQAKAWMAERIYNHAIPSARLQVSQDVTHGISGNLAQLLAGIAGRKKTQVIDAKAVEVKPVLPIRDNSYCATDDTQTIVTTTLEKSGKTRHRAMRRRKPRAES
Ga0335036_0031981_478_762F003962N/AVVLNHDREQLKVAHKFIALLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFETHQKALQSLHDACPSVWDTDEVDDQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.