| Basic Information | |
|---|---|
| Taxon OID | 3300034106 Open in IMG/M |
| Scaffold ID | Ga0335036_0004512 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11863 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (11.11%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000847 | Metagenome / Metatranscriptome | 861 | N |
| F002356 | Metagenome / Metatranscriptome | 567 | N |
| F014844 | Metagenome / Metatranscriptome | 259 | Y |
| F027126 | Metagenome / Metatranscriptome | 195 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335036_0004512_2407_2577 | F014844 | N/A | MLIGYGYGYPTNMLQGGVAAGVWALINARATADGATAAEAAVDGCLFNRFAVIYNF |
| Ga0335036_0004512_2880_3383 | F000847 | N/A | MSWIKIKQALLDLANNHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSANTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPSEDWTLSASVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPS |
| Ga0335036_0004512_855_1121 | F027126 | N/A | MATFRKYEFAVYADFRTINDSEAAPRTVVELGHINPANPKAWCVDILWEGSEPKNWTKYQTWPEPVGIHTFAGWDEQYAADYNERKSL |
| Ga0335036_0004512_9794_10426 | F002356 | N/A | MNLKNAIESLRSELRKFSTQKQSFADYKLTDGTVVRVDGDLVAGTAVYVVAEDGTLPAPDGEHVVEGVGTIKTEGGKIVEVIAAEVATPVIEPLPVAAEITPEVAVEVTEEIKEAYPAMTPEVVEAIVAKHLGAIMEELKVAYAEMGKMKEKMSAFASQVETMADIVEKVSELPAEAPKASGSAIVEQRKAQASQNFNALAQALQSLKKN |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |