| Basic Information | |
|---|---|
| Taxon OID | 3300034106 Open in IMG/M |
| Scaffold ID | Ga0335036_0001694 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19579 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (70.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000635 | Metagenome / Metatranscriptome | 970 | Y |
| F007467 | Metagenome / Metatranscriptome | 350 | Y |
| F025460 | Metagenome | 201 | N |
| F030376 | Metagenome / Metatranscriptome | 185 | N |
| F035218 | Metagenome / Metatranscriptome | 172 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335036_0001694_10801_11517 | F025460 | AGGAG | MAVLDIPAMMDMFRQDELQKQAVAEAQRKQAMEERAMAIKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGSTITNEQSLENEEVQAQRESINDRLRKLSAERLKQELEIAKGDTRTGAMELGLGLVGMKKRSDVMKELEAERGVLQGRMAELGFNRQTGQMETETPEGAPTAIAPSAPAIAAPTIEQQPAQSQTPKNFNSLQEARAAGVKPGELIYINGKPGRLQARQ |
| Ga0335036_0001694_15944_16309 | F030376 | GAG | MKAITMITLTAMLMASVMAEDDDADAADFVGAVLKRNGFSCGRGCVISEDGGMAYSSSSGRSIISTDGFYYKSGSSVVGKDETFISKSKNFFYGTSTTIKAGSAYMNEGAVWVESQEEDN |
| Ga0335036_0001694_16728_16907 | F007467 | N/A | VNEKEAWAKFEAGLKDMESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISKANKTWRN |
| Ga0335036_0001694_2668_3438 | F035218 | AGGA | MPLVKNPSNIDNFLFSTGRTRAFRVGNAGSYFKSAGVGATATGGNTLGFNLSINAGSAAAGTAKVGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYIGSTNSVIRIVFGGTGNSVDAPAAGANGLTIKGFGAEFALQSGVIQARLIGFDSAYLTPTSYTTLTNGFGLVASDNRFFGVVIESDGAGNIYLYGADSSINPNINIGQSPLLTLTGGPTNDTSTNRFGPEIQCSNNASVAPTASPSAILQSTYYLIDVQ |
| Ga0335036_0001694_5612_6310 | F000635 | AGGA | MTLTEIAQYAGEKIGKTDADTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTSRTITLGTNVETPLSVAYNDAEVDPIDLATIVSQDPGLLSDDRTGDPDTYHFTGRNSSGVAQLDLYPRLATSGTIPLRVIEKLKCLTRTNYIVDFPPSNDALGDELRLPHVHHLVLALTHADALERERQYTKAQVITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |