NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0000401

Scaffold Ga0335036_0000401


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0000401 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38686
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (68.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014122Metagenome / Metatranscriptome265Y
F071014Metagenome122N
F078713Metagenome116Y
F090292Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0000401_22530_22736F090292GGAGMNERIRKLMDGCFDVTVDSRGREECTADYINVEKFADRIIMECAELAEECYCGDTVKSLIMNHFGIEP
Ga0335036_0000401_23148_23321F078713GGAGMMNTIIPAKEVAASIWKIMEEVVNKLPEKDRENLKAVMLDQLGVAMFNGPKEKEKNE
Ga0335036_0000401_23919_24320F071014GAGMMHPDTELLMHLAANLVREYPNGVSTVDMHLRMAISLDKARKILCFARKARLLGVAGSGVTARWASPERAAELDAGRWTKRKLQHKACRDRRIAARQAASELAPKRVAKPFKIHAPNSVWQLADFPCDQLKQR
Ga0335036_0000401_3774_3935F014122GAGMSFGVGLRNAVAIGLGGIATLFSGYASAQAQSNLITESVDNLVTEASGLILTE
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