NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0000366

Scaffold Ga0335036_0000366


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0000366 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40342
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (50.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014606Metagenome261Y
F087117Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0000366_17479_17913F014606N/AMSTRTQIRNAIGAKLTAGAAVVPTANLLKGRNNTIASVSFPSAAVYAVEEQIDVRSLAPSNRVQYRQLTVNVDYFTAQTGVTFIDDLFDTGSAAVEAAVLEDVTLGGVCDDLHLTNVQYVIEDDEDKRWGVARHTFNCIYLTTD
Ga0335036_0000366_38455_39105F087117AGGAGVSDDAQSSVAIYAKVNLANIVKKLKAGKTLSGSERKALDEYEAQQAGTEWVKDVSALARELGLSRQTVYEARNRFPNDAPAKHPDGKKENLDAWRKFCAEKLIGKDVSTKTLADLKAELMREQIELARAKNRREAGEMIEREVVRSMLRLLSQKLDLLLRLKLEVELGPRVVGKAAAEANVEGSRILDEIREVIAGNIARFESEAVKATTAPEDAE
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