NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335010_0016237

Scaffold Ga0335010_0016237


Overview

Basic Information
Taxon OID3300034092 Open in IMG/M
Scaffold IDGa0335010_0016237 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5909
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006503Metagenome / Metatranscriptome371N
F015705Metagenome / Metatranscriptome252N
F025272Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0335010_0016237_1245_1496F025272N/AMDILVFPILISALATLAVVEFRVLPSWFYALPFAKRKPFSCMTCFGFWMGVLLTLPTCQWYLAPILGLASSATAILLREWTFK
Ga0335010_0016237_1481_1762F006503N/AMDLQMTNEQFLIAQKHRKYWDQYIASLTMRLPPDAVAELQAILTAHGRPPTNWWCADCVKSALQYIYMQADLFAESNQNTINHSLNAPTNPEQ
Ga0335010_0016237_5477_5908F015705GGAMKVVHYYHIYCGGNWQLILNQHMMAVCNYGLINVLDEIRVGIVGPPEQRKAVKEVLEGSMVADKVKVVVTRTNAWEQATLTEMYRASQEEEAVYLYAHTKGAANPSLTTQLWGRSMLFFNVVAWERCLQLLEGVDAVGCHWITK
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