| Basic Information | |
|---|---|
| Taxon OID | 3300034091 Open in IMG/M |
| Scaffold ID | Ga0326724_0000299 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 113336 |
| Total Scaffold Genes | 119 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 72 (60.50%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003063 | Metagenome / Metatranscriptome | 509 | Y |
| F022119 | Metagenome / Metatranscriptome | 216 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326724_0000299_104050_104208 | F022119 | N/A | MLKRIEGVCGEYICINPGCLENKKARGQEYAEFYGLTQAETDENYRRAPSKK |
| Ga0326724_0000299_13643_14068 | F003063 | N/A | VRKYTIKRSREALVLKAENVFKIAVTYSRVRVFLTSKGWEFQGKDEEIEMDSFSNKKTGKKVFVVDISEDFPVTFLMGALSVPEFSTIASELTPEIQLLEVYSSWEGKPTTIVVAMTEEQVKSMFGRRTKMRKLAVNRTRV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |