NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0045531

Scaffold Ga0335020_0045531


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0045531 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2332
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F016523Metagenome / Metatranscriptome246Y
F036685Metagenome / Metatranscriptome169N
F074787Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0045531_1105_1260F016523AGGAGMYTIISPRLGTPGDEFIAQDGVNIDALLDGGLISTDSVKKSSKVKPEPKEQ
Ga0335020_0045531_1761_2069F036685AGGAGMQVKLSIDLGDGKPARQMTTNMLAIVDWEKTENRRSADGKGIGFSDMCCWAYTLCKLAGDKMPATWREWVNENPNMTITPINELVDETPFIEGLGGEASAKS
Ga0335020_0045531_2167_2331F074787AGAAGMPVSHSVEVVGLKETINALRKIDPQLQKDFKAEATAIAQPAIQAAKLAYSQFPLS
Ga0335020_0045531_98_733F001326AGGCGGMATYTVTNKYLIDDFAVLQLLTPTEIAVGELITVAGVDATFNGSNLVVRALPQYRYVGVDTQGDLLYDIDEPIANQVLYAKVANDVDRVAATGTVTYTLTCTWVTAAQLVTYLGVVITNPSDDYTLITQAVSAGNQFCYRRRQEAGYIDSLSNSPGGDQTLGTLMYCAALWRSRGSLENAFAAFDGMGTAPQQSLTPIVKQLLGIDRPACA
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