NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335020_0041616

Scaffold Ga0335020_0041616


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0041616 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2459
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022886Metagenome / Metatranscriptome212N
F025032Metagenome203N
F030763Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0041616_133_501F025032N/AMISLKSILEGDSNVDKFTFKQRDAGGVRPSYQNTKLVKQGTAKDYVKYNVMVMGKFGGTIYYNKTDKSMIASGGESNTTFPPKRFKSIKDAIDYVGCNSTRSYNTNIPLDGMDTSFGTARYV
Ga0335020_0041616_1812_2126F030763GAGMLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNANTKKSITMAIIREPLAEGTETFETAYHFSLVNDDVRPANIIEDVIYHSVLEDMELFGESLTHYLNTI
Ga0335020_0041616_2128_2433F022886N/AMITIKNWDKLTRMFRSQIDIGELELYYEIIYYYPTLPSNEYYRITLSRISPPQKDHPHKDEYLMLCGVSEYWLNKKELEDVDSVYEAIVDVVVRHNLKVRV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.